Skip to content

Instantly share code, notes, and snippets.

@peterdfields
peterdfields / gist:4535363
Created January 15, 2013 01:53
beagle failed to build on 10.8.2
################### verbose output #################################
brew install --HEAD beagle --with-cuda -v
==> Checking out http://beagle-lib.googlecode.com/svn/trunk/
svn up --force /Library/Caches/Homebrew/beagle--svn-HEAD
At revision 1092.
svn export --force /Library/Caches/Homebrew/beagle--svn-HEAD /private/tmp/beagle-UFvZ
Export complete.
==> Patching
/usr/bin/patch -f -p1 -i 000-homebrew.diff
patching file configure.ac
@peterdfields
peterdfields / gist:3981014
Created October 30, 2012 15:39
Homebrew built R 2.15.2 fails to build rgl package
> install.packages("rgl", dep=TRUE)
Installing package(s) into ‘/usr/local/Cellar/r/2.15.2/R.framework/Versions/2.15/Resources/library’
(as ‘lib’ is unspecified)
trying URL 'http://cran.cnr.Berkeley.edu/src/contrib/rgl_0.92.894.tar.gz'
Content type 'application/x-gzip' length 1713982 bytes (1.6 Mb)
opened URL
==================================================
downloaded 1.6 Mb
* installing *source* package ‘rgl’ ...
@peterdfields
peterdfields / gist:3438433
Created August 23, 2012 16:36
brew install r fails
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by R configure 2.15.1, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ ./configure --prefix=/usr/local/Cellar/r/2.15.1 --with-aqua --enable-R-framework --with-lapack
## --------- ##
## Platform. ##
@peterdfields
peterdfields / gist:3326735
Created August 11, 2012 19:55
Homebrew error building package igraph
his file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by igraph configure 0.6, which was
generated by GNU Autoconf 2.61. Invocation command line was
$ ./configure --disable-debug --disable-dependency-tracking --prefix=/usr/local/Cellar/igraph/0.6
## --------- ##
## Platform. ##
@peterdfields
peterdfields / gist:3179085
Created July 25, 2012 22:24
brew install blast fail
brew install blast
==> Downloading ftp://ftp.ncbi.nih.gov/blast/executables/blast+/2.2.25/ncbi-blast-2.2.25+-src.tar.gz
######################################################################## 100.0%
######################################################################## 100.0%==> Patching
patching file c++/src/build-system/configure
==> ./configure --prefix=/usr/local/Cellar/blast/2.2.25
==> make
if test -f /private/tmp/homebrew-blast-2.2.25-tyuN/ncbi-blast-2.2.25+-src/c++/GCC421-Debug64/build/Makefile.flat; then \
cd /private/tmp/homebrew-blast-2.2.25-tyuN/ncbi-blast-2.2.25+-src/c++/GCC421-Debug64/build && make -f Makefile.flat; \
elif test -s ""; then \
@peterdfields
peterdfields / gist:2996886
Created June 26, 2012 16:28
brew --config (graphviz issues)
brew --config
HOMEBREW_VERSION: 0.9
HEAD: b0cc25007a9eb3e8b5409e3bbd6932611e3c9f94
HOMEBREW_PREFIX: /usr/local
HOMEBREW_CELLAR: /usr/local/Cellar
CPU: quad-core 64-bit arrandale
OS X: 10.7.4-x86_64
Xcode: 4.3.2
CLT: 1.0.0.9000000000.1.1249367152
@peterdfields
peterdfields / gist:2996874
Created June 26, 2012 16:27
brew doctor (graphviz issues)
brew doctor
Error: Unbrewed dylibs were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.
Unexpected dylibs:
/usr/local/lib/libhmsbeagle-cpu-sse.1.dylib /usr/local/lib/libhmsbeagle-cpu.1.dylib /usr/local/lib/libhmsbeagle-cuda.1.dylib /usr/local/lib/libhmsbeagle.1.dylib /usr/local/lib/libusb-0.1.4.4.4.dylib /usr/local/lib/libusbpp-0.1.4.4.4.dylib
Error: Unbrewed .la files were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
@peterdfields
peterdfields / gist:2996831
Created June 26, 2012 16:23
brew install -v graphviz
brew install -v graphviz
Warning: Formula will not build with Clang, trying LLVM
==> Downloading http://www.graphviz.org/pub/graphviz/stable/SOURCES/graphviz-2.28.0.tar.gz
Already downloaded: /Library/Caches/Homebrew/graphviz-2.28.0.tar.gz
/usr/bin/tar xf /Library/Caches/Homebrew/graphviz-2.28.0.tar.gz
==> Downloading patches
/usr/bin/curl -qf#LA Homebrew 0.9 (Ruby 1.8.7-357; Mac OS X 10.7.4) https://trac.macports.org/export/78507/trunk/dports/graphics/graphviz-gui/files/patch-project.pbxproj.diff -o 001-homebrew.diff
######################################################################## 100.0%
==> Patching
/usr/bin/patch -f -p1 -i 000-homebrew.diff
@peterdfields
peterdfields / gist:2991656
Created June 25, 2012 22:05
brew install graphviz --use-llvm fail
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by graphviz configure 2.28.0, which was
generated by GNU Autoconf 2.65. Invocation command line was
$ ./configure --disable-debug --disable-dependency-tracking --prefix=/usr/local/Cellar/graphviz/2.28.0 --with-qt=no --with-quartz --without-pangocairo
## --------- ##
## Platform. ##
@peterdfields
peterdfields / hack.sh
Created March 31, 2012 20:07 — forked from erikh/hack.sh
OSX For Hackers
#!/usr/bin/env sh
##
# This is script with usefull tips taken from:
# https://github.com/mathiasbynens/dotfiles/blob/master/.osx
#
# install it:
# curl -sL https://raw.github.com/gist/2108403/hack.sh | sh
#