nf-core/viralrecon v2.3 Mosdepth config to publish/output BED.GZ files

viralrecon-2.3-mosdepth-bed-gz.config

// nf-core/viralrecon v2.3
// specify output of bed.gz files produced by Mosdepth
process {
  withName: 'MOSDEPTH_GENOME' {
    ext.args = '--fast-mode'
    publishDir = [
        path: { "${params.outdir}/variants/bowtie2/mosdepth/genome" },
        mode: 'copy',
        pattern: "*.{summary.txt,bed.gz}"
    ]
  }
  withName: 'MOSDEPTH_AMPLICON' {
    ext.args = '--fast-mode --use-median --thresholds 0,1,10,50,100,500'
    publishDir = [
      path: { "${params.outdir}/variants/bowtie2/mosdepth/amplicon" },
      mode: 'copy',
      pattern: "*.{summary.txt,bed.gz}"
    ]
  }
}