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February 1, 2022 16:53
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SARS-CoV-2 MN908947.3 modified GFF with ORF1ab split into ORF1a and ORF1b for proper SnpEff variant effect analysis of ORF1b
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| ##gff-version 3 | |
| #!gff-spec-version 1.21 | |
| #!processor NCBI annotwriter | |
| #!genome-build ASM985889v3 | |
| #!genome-build-accession NCBI_Assembly:GCA_009858895.3 | |
| ##sequence-region MN908947.3 1 29903 | |
| ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=2697049 | |
| MN908947.3 Genbank region 1 29903 . + . ID=MN908947.3:1..29903;Dbxref=taxon:2697049;collection-date=Dec-2019;country=China;gbkey=Src;genome=genomic;isolate=Wuhan-Hu-1;mol_type=genomic RNA;nat-host=Homo sapiens;old-name=Wuhan seafood market pneumonia virus | |
| MN908947.3 Genbank five_prime_UTR 1 265 . + . ID=id-MN908947.3:1..265;gbkey=5'UTR | |
| MN908947.3 Genbank gene 266 13468 . + . ID=gene-ORF1a;Name=ORF1a;gbkey=Gene;gene=ORF1a;gene_biotype=protein_coding | |
| MN908947.3 Genbank CDS 266 13468 . + 0 ID=cds-QHD43415.1;Parent=gene-ORF1a;Dbxref=NCBI_GP:QHD43415.1;Name=QHD43415.1;Note=translated by -1 ribosomal frameshift;exception=ribosomal slippage;gbkey=CDS;gene=ORF1a;product=ORF1a polyprotein;protein_id=QHD43415.1 | |
| MN908947.3 Genbank gene 13468 21555 . + . ID=gene-ORF1b;Name=ORF1b;gbkey=Gene;gene=ORF1b;gene_biotype=protein_coding | |
| MN908947.3 Genbank CDS 13468 21555 . + 0 ID=cds-QHD43415.1;Parent=gene-ORF1b;Dbxref=NCBI_GP:QHD43415.1;Name=QHD43415.1;Note=translated by -1 ribosomal frameshift;exception=ribosomal slippage;gbkey=CDS;gene=ORF1b;product=ORF1b polyprotein;protein_id=QHD43415.1 | |
| MN908947.3 Genbank gene 21563 25384 . + . ID=gene-S;Name=S;gbkey=Gene;gene=S;gene_biotype=protein_coding | |
| MN908947.3 Genbank CDS 21563 25384 . + 0 ID=cds-QHD43416.1;Parent=gene-S;Dbxref=NCBI_GP:QHD43416.1;Name=QHD43416.1;Note=structural protein;gbkey=CDS;gene=S;product=surface glycoprotein;protein_id=QHD43416.1 | |
| MN908947.3 Genbank gene 25393 26220 . + . ID=gene-ORF3a;Name=ORF3a;gbkey=Gene;gene=ORF3a;gene_biotype=protein_coding | |
| MN908947.3 Genbank CDS 25393 26220 . + 0 ID=cds-QHD43417.1;Parent=gene-ORF3a;Dbxref=NCBI_GP:QHD43417.1;Name=QHD43417.1;gbkey=CDS;gene=ORF3a;product=ORF3a protein;protein_id=QHD43417.1 | |
| MN908947.3 Genbank gene 26245 26472 . + . ID=gene-E;Name=E;gbkey=Gene;gene=E;gene_biotype=protein_coding | |
| MN908947.3 Genbank CDS 26245 26472 . + 0 ID=cds-QHD43418.1;Parent=gene-E;Dbxref=NCBI_GP:QHD43418.1;Name=QHD43418.1;Note=structural protein%3B E protein;gbkey=CDS;gene=E;product=envelope protein;protein_id=QHD43418.1 | |
| MN908947.3 Genbank gene 26523 27191 . + . ID=gene-M;Name=M;gbkey=Gene;gene=M;gene_biotype=protein_coding | |
| MN908947.3 Genbank CDS 26523 27191 . + 0 ID=cds-QHD43419.1;Parent=gene-M;Dbxref=NCBI_GP:QHD43419.1;Name=QHD43419.1;Note=structural protein;gbkey=CDS;gene=M;product=membrane glycoprotein;protein_id=QHD43419.1 | |
| MN908947.3 Genbank gene 27202 27387 . + . ID=gene-ORF6;Name=ORF6;gbkey=Gene;gene=ORF6;gene_biotype=protein_coding | |
| MN908947.3 Genbank CDS 27202 27387 . + 0 ID=cds-QHD43420.1;Parent=gene-ORF6;Dbxref=NCBI_GP:QHD43420.1;Name=QHD43420.1;gbkey=CDS;gene=ORF6;product=ORF6 protein;protein_id=QHD43420.1 | |
| MN908947.3 Genbank gene 27394 27759 . + . ID=gene-ORF7a;Name=ORF7a;gbkey=Gene;gene=ORF7a;gene_biotype=protein_coding | |
| MN908947.3 Genbank CDS 27394 27759 . + 0 ID=cds-QHD43421.1;Parent=gene-ORF7a;Dbxref=NCBI_GP:QHD43421.1;Name=QHD43421.1;gbkey=CDS;gene=ORF7a;product=ORF7a protein;protein_id=QHD43421.1 | |
| MN908947.3 Genbank gene 27894 28259 . + . ID=gene-ORF8;Name=ORF8;gbkey=Gene;gene=ORF8;gene_biotype=protein_coding | |
| MN908947.3 Genbank CDS 27894 28259 . + 0 ID=cds-QHD43422.1;Parent=gene-ORF8;Dbxref=NCBI_GP:QHD43422.1;Name=QHD43422.1;gbkey=CDS;gene=ORF8;product=ORF8 protein;protein_id=QHD43422.1 | |
| MN908947.3 Genbank gene 28274 29533 . + . ID=gene-N;Name=N;gbkey=Gene;gene=N;gene_biotype=protein_coding | |
| MN908947.3 Genbank CDS 28274 29533 . + 0 ID=cds-QHD43423.2;Parent=gene-N;Dbxref=NCBI_GP:QHD43423.2;Name=QHD43423.2;Note=structural protein;gbkey=CDS;gene=N;product=nucleocapsid phosphoprotein;protein_id=QHD43423.2 | |
| MN908947.3 Genbank gene 29558 29674 . + . ID=gene-ORF10;Name=ORF10;gbkey=Gene;gene=ORF10;gene_biotype=protein_coding | |
| MN908947.3 Genbank CDS 29558 29674 . + 0 ID=cds-QHI42199.1;Parent=gene-ORF10;Dbxref=NCBI_GP:QHI42199.1;Name=QHI42199.1;gbkey=CDS;gene=ORF10;product=ORF10 protein;protein_id=QHI42199.1 | |
| MN908947.3 Genbank three_prime_UTR 29675 29903 . + . ID=id-MN908947.3:29675..29903;gbkey=3'UTR | |
| ### |
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