Skip to content

Instantly share code, notes, and snippets.

@petermchale
Created March 19, 2021 22:02
Show Gist options
  • Save petermchale/34ebbc6d7361c376152095ed0f1600df to your computer and use it in GitHub Desktop.
Save petermchale/34ebbc6d7361c376152095ed0f1600df to your computer and use it in GitHub Desktop.
Display the source blob
Display the rendered blob
Raw
{
"cells": [
{
"cell_type": "code",
"execution_count": 3,
"metadata": {},
"outputs": [],
"source": [
"import tensorflow as tf\n",
"import tensorflow_probability as tfp\n",
"\n",
"tfd = tfp.distributions"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## A simple weather model\n",
"\n",
"Represent a cold day with 0 and a hot day with 1.\n",
"Suppose the first day of a sequence has a 0.8 chance of being cold.\n",
"\n"
]
},
{
"cell_type": "code",
"execution_count": 11,
"metadata": {},
"outputs": [],
"source": [
"hidden_distribution_initial = tfd.Categorical(probs=[0.8, 0.2])"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Suppose a cold day has a 30% chance of being followed by a hot day\n",
"and a hot day has a 20% chance of being followed by a cold day.\n",
"We can model this as:\n",
"\n"
]
},
{
"cell_type": "code",
"execution_count": 6,
"metadata": {},
"outputs": [],
"source": [
"transition_distribution = tfd.Categorical(probs=[[0.7, 0.3],\n",
" [0.2, 0.8]])"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"Suppose additionally that on each day the temperature is\n",
"normally distributed with mean and standard deviation 0 and 5 on\n",
"a cold day and mean and standard deviation 15 and 10 on a hot day.\n",
"We can model this with:\n",
"\n"
]
},
{
"cell_type": "code",
"execution_count": 14,
"metadata": {},
"outputs": [],
"source": [
"emission_distribution = tfd.Normal(loc=[0., 15.], scale=[5., 10.])"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"We can combine these distributions into a single week long\n",
"Hidden Markov model with:\n",
"\n",
"\n"
]
},
{
"cell_type": "code",
"execution_count": 15,
"metadata": {},
"outputs": [],
"source": [
"model = tfd.HiddenMarkovModel(\n",
" initial_distribution = hidden_distribution_initial,\n",
" transition_distribution = transition_distribution,\n",
" observation_distribution = emission_distribution,\n",
" num_steps=7)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Inference \n"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"The expected temperatures for each day are given by:\n",
"\n"
]
},
{
"cell_type": "code",
"execution_count": 10,
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"<tf.Tensor: shape=(7,), dtype=float32, numpy=\n",
"array([2.9999998, 5.9999995, 7.4999995, 8.25 , 8.625001 , 8.812501 ,\n",
" 8.90625 ], dtype=float32)>"
]
},
"execution_count": 10,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"model.mean() # shape [7], elements approach 9.0"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"The log pdf of a week of temperature 0 is:"
]
},
{
"cell_type": "code",
"execution_count": 13,
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"<tf.Tensor: shape=(), dtype=float32, numpy=-19.855635>"
]
},
"execution_count": 13,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"model.log_prob(tf.zeros(shape=[7]))"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": []
}
],
"metadata": {
"kernelspec": {
"display_name": "Python 3",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.7.3"
},
"toc": {
"base_numbering": 1,
"nav_menu": {},
"number_sections": true,
"sideBar": true,
"skip_h1_title": false,
"title_cell": "Table of Contents",
"title_sidebar": "Contents",
"toc_cell": false,
"toc_position": {},
"toc_section_display": true,
"toc_window_display": false
}
},
"nbformat": 4,
"nbformat_minor": 2
}
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment