View XLabs.Droid release mode crash.txt
My project error report:
Severity Code Description Project File Line
Error The "LinkAssemblies" task failed unexpectedly.
Xamarin.Android.XamarinAndroidException: error XA2006: Reference to metadata item 'System.Void Android.OS.BaseBundle::PutBoolean(System.String,System.Boolean)' (defined in 'XLabs.Platform.Droid, Version=2.0.5743.21415, Culture=neutral, PublicKeyToken=null') from 'XLabs.Platform.Droid, Version=2.0.5743.21415, Culture=neutral, PublicKeyToken=null' could not be resolved. ---> Mono.Cecil.ResolutionException: Failed to resolve System.Void Android.OS.BaseBundle::PutBoolean(System.String,System.Boolean)
at Mono.Linker.Steps.MarkStep.MarkMethod(MethodReference reference)
at Mono.Linker.Steps.MarkStep.MarkInstruction(Instruction instruction)
at Mono.Linker.Steps.MarkStep.MarkMethodBody(MethodBody body)
at Mono.Linker.Steps.MarkStep.ProcessMethod(MethodDefinition method)
at Mono.Linker.Steps.MarkStep.ProcessQueue()
View gist:db9fe66b8f961be69556
Process: WebServicesRxNormSample [44805]
Path: /Users/USER/Library/Developer/CoreSimulator/Devices/7EB4CBDC-0E69-4D72-A098-1CFA195CC6CD/data/Containers/Bundle/Application/684D803A-B9B1-4A6D-985A-E907A5AA261E/WebServicesRxNormSample.app/WebServicesRxNormSample
Identifier: WebServicesRxNormSample
Version: 1.0
Code Type: X86 (Native)
Parent Process: launchd_sim [44741]
Responsible: launchd_sim [44741]
User ID: 501
Date/Time: 2015-05-27 08:54:25.828 +0200
View gist:a8195ca4286ae905e6aa
Loaded assembly: /Users/User/Library/Developer/CoreSimulator/Devices/7BDF52FF-E614-40B4-9453-B01D806DEB00/data/Containers/Bundle/Application/12B1602F-49BB-453E-BAA7-7982DE9FE793/WebServicesRxNormSample.app/monotouch.dll [External]
Loaded assembly: /Users/User/Library/Developer/CoreSimulator/Devices/7BDF52FF-E614-40B4-9453-B01D806DEB00/data/Containers/Bundle/Application/12B1602F-49BB-453E-BAA7-7982DE9FE793/WebServicesRxNormSample.app/System.Core.dll [External]
Loaded assembly: /Users/User/Library/Developer/CoreSimulator/Devices/7BDF52FF-E614-40B4-9453-B01D806DEB00/data/Containers/Bundle/Application/12B1602F-49BB-453E-BAA7-7982DE9FE793/WebServicesRxNormSample.app/System.dll [External]
Loaded assembly: /Users/User/Library/Developer/CoreSimulator/Devices/7BDF52FF-E614-40B4-9453-B01D806DEB00/data/Containers/Bundle/Application/12B1602F-49BB-453E-BAA7-7982DE9FE793/WebServicesRxNormSample.app/WebServicesRxNormSample.exe
Loaded assembly: /Users/User/Library/Developer/CoreSimulator/Devices/7BDF52FF-E614-40B4-9453-B01D8
View gist:67bab93ce44b754348ea
vagrant@vagrant-ubuntu-trusty-64:/vagrant_data/seqc-test/seqc/work$ bcbio_nextgen.py ../config/seqc.yaml -n 8
[2014-10-30 16:28] Using input YAML configuration: /vagrant_data/seqc-test/seqc/config/seqc.yaml
[2014-10-30 16:28] Checking sample YAML configuration: /vagrant_data/seqc-test/seqc/config/seqc.yaml
[2014-10-30 16:28] Testing minimum versions of installed programs
[2014-10-30 16:28] Resource requests: AlienTrimmer, picard; memory: 2.0, 3.5; cores: 1, 1
[2014-10-30 16:28] Configuring 1 jobs to run, using 1 cores each with 3.8g of memory reserved for each job
[2014-10-30 16:28] Timing: adapter trimming
[2014-10-30 16:28] multiprocessing: prepare_sample
[2014-10-30 16:28] Preparing UHRR_rep1
[2014-10-30 16:28] multiprocessing: trim_sample
View gist:6f7c2ba0328ce38cb22b
-(void)awakeFromNib
{
if(!self.descriptionTextView)
{
self.descriptionTextView = [[UITextView alloc] initWithFrame:self.bounds];
self.descriptionTextView.text = @"Lorem ipsum dolor sit er elit lamet, consectetaur cillium adipisicing pecu, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit esse cillum dolore eu fugiat nulla pariatur. Excepteur sint occaecat cupidatat non proident, sunt in culpa qui officia deserunt mollit anim id est laborum. Nam liber te conscient to factor tum poen legum odioque civiuda.Lorem ipsum dolor sit er elit lamet, consectetaur cillium adipisicing pecu, sed do eiusmod tempor incididunt ut labore et dolore magna aliqua. Ut enim ad minim veniam, quis nostrud exercitation ullamco laboris nisi ut aliquip ex ea commodo consequat. Duis aute irure dolor in reprehenderit in voluptate velit
View gist:6057cbcab7ebab5f96f7
This file has been truncated, but you can view the full file.
[Restored contents truncated]
Selecting previously unselected package libxpp3-java.
Preparing to unpack .../libxpp3-java_1.1.4c-2build1_all.deb ...
Unpacking libxpp3-java (1.1.4c-2build1) ...
Selecting previously unselected package libdom4j-java.
Preparing to unpack .../libdom4j-java_1.6.1+dfsg.3-2ubuntu1_all.deb ...
Unpacking libdom4j-java (1.6.1+dfsg.3-2ubuntu1) ...
Selecting previously unselected package libosgi-core-java.
Preparing to unpack .../libosgi-core-java_4.3.0-4_all.deb ...
View vagrant installation
christophes-pro:bcbio pfaucon$ sh vagrant_osx.sh
--2014-10-02 15:45:03-- https://raw.github.com/chapmanb/bcbio-nextgen/master/scripts/vm/Vagrantfile
Resolving raw.github.com... 23.235.47.133
Connecting to raw.github.com|23.235.47.133|:443... connected.
HTTP request sent, awaiting response... 301 Moved Permanently
Location: https://raw.githubusercontent.com/chapmanb/bcbio-nextgen/master/scripts/vm/Vagrantfile [following]
--2014-10-02 15:45:04-- https://raw.githubusercontent.com/chapmanb/bcbio-nextgen/master/scripts/vm/Vagrantfile
Resolving raw.githubusercontent.com... 23.235.47.133
Connecting to raw.githubusercontent.com|23.235.47.133|:443... connected.
HTTP request sent, awaiting response... 200 OK
View gist:b3f15f9258db5fec3f34
==> default: Importing base box 'mortar-precise64-1400765389'...
==> default: Matching MAC address for NAT networking...
==> default: Setting the name of the VM: mortar_sandbox
==> default: Fixed port collision for 22 => 2222. Now on port 2200.
==> default: Clearing any previously set network interfaces...
==> default: Preparing network interfaces based on configuration...
default: Adapter 1: nat
==> default: Forwarding ports...
default: 22 => 2200 (adapter 1)
==> default: Running 'pre-boot' VM customizations...
View stratos_dev_buildscript_output
----------------- short version ----------------
vagrant@paas:~$ ./stratos_dev.sh -b
export JAVA_HOME=/usr/lib/jvm/java-7-openjdk-amd64/
Running 'mvn clean install'.
~ ~
Listening for transport dt_socket at address: 8888
[INFO] Scanning for projects...
[ERROR] The build could not read 1 project -> [Help 1]
[ERROR]
View Applications_with_delta_blast.py
# Copyright 2001 Brad Chapman.
# Revisions copyright 2009-2010 by Peter Cock.
# Revisions copyright 2010 by Phillip Garland.
# All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Definitions for interacting with BLAST related applications.
Obsolete wrappers for the old/classic NCBI BLAST tools (written in C):