EasyBuild test report for easyconfigs PR #960

easybuild_test_report_easyconfigs_pr960_20143008-UTC-12-30-38.md

Test report for easybuilders/easybuild-easyconfigs#960

Test result

Build succeeded for 0 out of 1 (1 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

• FAIL (build issue) Celera_Assembler-8.1-goolf-1.4.10.eb (partial log available at https://gist.github.com/e248964761d7ef87673f)

Time info

• start: Fri, 08 Aug 2014 12:24:51 +0000 (UTC)
• end: Fri, 08 Aug 2014 12:30:36 +0000 (UTC)

EasyBuild info

• easybuild-framework version: 1.13.0
• easybuild-easyblocks version: 1.13.0
• command line:

eb --debug --modules-tool=Lmod --upload-test-report --github-user=pforai --force --from-pr=960

• full configuration (includes defaults):

--buildpath=/home/GMI/petar.forai/.local/easybuild/build
--cleanup-builddir
--config=/net/gmi.oeaw.ac.at/software/mendel/29_04_2013/software/EasyBuild/1.13.0/lib64/python2.6/site-packages/easybuild_framework-1.13.0-py2.6.egg/easybuild/easybuild_config.py
--debug
--disable-allow-modules-tool-mismatch
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-dry-run
--disable-dry-run-short
--disable-experimental
--disable-ignore-osdeps
--disable-info
--disable-job
--disable-list-toolchains
--disable-logtostdout
--disable-pretend
--disable-quiet
--disable-recursive-module-unload
--disable-regtest
--disable-sequential
--disable-set-gid-bit
--disable-show-default-moduleclasses
--disable-skip
--disable-skip-test-cases
--disable-sticky-bit
--force
--from-pr=960
--github-user=pforai
--ignore-dirs=.git,.svn
--installpath=/home/GMI/petar.forai/.local/easybuild
--logfile-format=easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log
--module-naming-scheme=EasyBuildModuleNamingScheme
--moduleclasses=bio,chem,data,devel,ide,lib,mpi,perf,system,tools
--modules-tool=Lmod
--oldstyleconfig
--repository=FileRepository
--repositorypath=/home/GMI/petar.forai/.local/easybuild/ebfiles_repo
--sourcepath=/home/GMI/petar.forai/.local/easybuild/sources
--strict=warn
--subdir-modules=modules
--subdir-software=software
--tmp-logdir=/tmp
--upload-test-report

System info

• core count: 8
• cpu model: Intel(R) Xeon(R) CPU E5-2609 0 @ 2.40GHz
• cpu speed: 2394.336
• cpu vendor: Intel
• gcc version: Using built-in specs.; Target: x86_64-suse-linux; Configured with: ../configure --prefix=/usr --infodir=/usr/share/info --mandir=/usr/share/man --libdir=/usr/lib64 --libexecdir=/usr/lib64 --enable-languages=c,c++,objc,fortran,obj-c++,java,ada --enable-checking=release --with-gxx-include-dir=/usr/include/c++/4.3 --enable-ssp --disable-libssp --with-bugurl=http://bugs.opensuse.org/ --with-pkgversion='SUSE Linux' --disable-libgcj --disable-libmudflap --with-slibdir=/lib64 --with-system-zlib --enable-__cxa_atexit --enable-libstdcxx-allocator=new --disable-libstdcxx-pch --enable-version-specific-runtime-libs --program-suffix=-4.3 --enable-linux-futex --without-system-libunwind --with-cpu=generic --build=x86_64-suse-linux; Thread model: posix; gcc version 4.3.4 [gcc-4_3-branch revision 152973] (SUSE Linux) ;
• glibc version: 2.11.1
• hostname: login0
• kernel name: Linux
• os name: SLES
• os type: Linux
• os version: 11_SP1
• platform name: x86_64-unknown-linux
• python version: 2.6.8 (unknown, May 29 2012, 22:30:44) ; [GCC 4.3.4 [gcc-4_3-branch revision 152973]]
• system gcc path: /usr/bin/gcc
• system python path: /usr/bin/python

List of loaded modules

• std_env
• gmi_term_color
• gmi_resources
• bbcp/14.04.14.00.0-amd64_linux26
• EasyBuild/1.13.0

Environment

BASH_ENV = /usr/lmod/lmod/init/bash
BC_CORES_PER_NODE = 16
BC_CPUTYPE = intel-x86_64-sandybridge-avx
BC_HPC_SITE = GMI
BC_HPC_SYSTEM = Mendel
BC_LINUX_DIST = sles11sp1
BC_MEM_PER_NODE = 65536
C3_RSH = ssh -oConnectTimeout=10 -oForwardX11=no
COLORTERM = 1
CPU = x86_64
CSHEDIT = emacs
CVS_RSH = ssh
DISPLAY = localhost:13.0
EBDEVELBBCP = /net/gmi.oeaw.ac.at/software/mendel/29_04_2013/software/bbcp/14.04.14.00.0-amd64_linux26/easybuild/bbcp-14.04.14.00.0-amd64_linux26-easybuild-devel
EBDEVELEASYBUILD = /net/gmi.oeaw.ac.at/software/mendel/29_04_2013/software/EasyBuild/1.13.0/easybuild/EasyBuild-1.13.0-easybuild-devel
EBROOTBBCP = /net/gmi.oeaw.ac.at/software/mendel/29_04_2013/software/bbcp/14.04.14.00.0-amd64_linux26
EBROOTEASYBUILD = /net/gmi.oeaw.ac.at/software/mendel/29_04_2013/software/EasyBuild/1.13.0
EBVERSIONBBCP = 14.04.14.00.0
EBVERSIONEASYBUILD = 1.13.0
ENV = /etc/bash.bashrc
FROM_HEADER = 
G_BROKEN_FILENAMES = 1
G_FILENAME_ENCODING = @locale,UTF-8,ISO-8859-15,CP1252
HISTSIZE = 1000
HOME = /home/GMI/petar.forai
HOST = login0
HOSTNAME = login0
HOSTTYPE = x86_64
INFODIR = /usr/local/info:/usr/share/info:/usr/info
INFOPATH = /usr/local/info:/usr/share/info:/usr/info
INPUTRC = /etc/inputrc
KRB5CCNAME = FILE:/tmp/krb5cc_10101_Vw2q25
LANG = en_US.UTF-8
LD_LIBRARY_PATH = /net/gmi.oeaw.ac.at/software/mendel/29_04_2013/software/EasyBuild/1.13.0/lib64
LESS = -M -I
LESSCLOSE = lessclose.sh %s %s
LESSKEY = /etc/lesskey.bin
LESSOPEN = lessopen.sh %s
LESS_ADVANCED_PREPROCESSOR = no
LIBRARY_PATH = /net/gmi.oeaw.ac.at/software/mendel/29_04_2013/software/EasyBuild/1.13.0/lib64
LMOD_CMD = /usr/lmod/lmod/libexec/lmod
LMOD_COLORIZE = yes
LMOD_DEFAULT_MODULEPATH = /home/GMI/petar.forai/.local/easybuild/modules/all:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/../syscommon:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/vis:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/tools:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/toolchain:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/system:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/numlib:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/mpi:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/math:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/lib:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/lang:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/base:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/devel:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/debugger:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/data:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/compiler:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/bio
LMOD_DIR = /usr/lmod/lmod/libexec/
LMOD_PREPEND_BLOCK = normal
LMOD_SETTARG_CMD = :
LMOD_SETTARG_SUPPORT = no
LMOD_arch = x86_64
LMOD_sys = Linux
LOGNAME = petar.forai
LS_COLORS = no=00:fi=00:di=01;34:ln=00;36:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=41;33;01:ex=00;32:*.cmd=00;32:*.exe=01;32:*.com=01;32:*.bat=01;32:*.btm=01;32:*.dll=01;32:*.tar=00;31:*.tbz=00;31:*.tgz=00;31:*.rpm=00;31:*.deb=00;31:*.arj=00;31:*.taz=00;31:*.lzh=00;31:*.lzma=00;31:*.zip=00;31:*.zoo=00;31:*.z=00;31:*.Z=00;31:*.gz=00;31:*.bz2=00;31:*.tb2=00;31:*.tz2=00;31:*.tbz2=00;31:*.avi=01;35:*.bmp=01;35:*.fli=01;35:*.gif=01;35:*.jpg=01;35:*.jpeg=01;35:*.mng=01;35:*.mov=01;35:*.mpg=01;35:*.pcx=01;35:*.pbm=01;35:*.pgm=01;35:*.png=01;35:*.ppm=01;35:*.tga=01;35:*.tif=01;35:*.xbm=01;35:*.xpm=01;35:*.dl=01;35:*.gl=01;35:*.wmv=01;35:*.aiff=00;32:*.au=00;32:*.mid=00;32:*.mp3=00;32:*.ogg=00;32:*.voc=00;32:*.wav=00;32:
LS_OPTIONS = -N --color=tty -T 0
MACHTYPE = x86_64-suse-linux
MAIL = /var/mail/petar.forai
MANPATH = /usr/local/man:/usr/share/man:/usr/man:/opt/c3/man:/opt/pbs/default/man:/opt/sgi/share/man
MINICOM = -c on
MIRRORPATH = /net/gmi.oeaw.ac.at/software/sles11sp1/mirror/
MODULEPATH = /home/GMI/petar.forai/.local/easybuild/modules/all:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/../syscommon:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/vis:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/tools:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/toolchain:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/system:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/numlib:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/mpi:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/math:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/lib:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/lang:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/base:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/devel:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/debugger:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/data:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/compiler:/net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx/modules/bio
MODULEPATH_ROOT = /usr/local/Modules/modulefiles
MORE = -sl
NNTPSERVER = news
OSCAR_HOME = /opt/oscar
OSTYPE = linux
PAGER = less
PATH = /net/gmi.oeaw.ac.at/software/mendel/29_04_2013/software/EasyBuild/1.13.0/bin:/net/gmi.oeaw.ac.at/software/mendel/29_04_2013/software/bbcp/14.04.14.00.0-amd64_linux26:/usr/local/bin:/usr/bin:/bin:/usr/bin/X11:/usr/X11R6/bin:/usr/games:/opt/c3/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin:/opt/pbs/default/sbin:/opt/pbs/default/bin:.:/opt/sgi/sbin:/opt/sgi/bin
PROFILEREAD = true
PWD = /home/GMI/petar.forai
PYTHONPATH = /net/gmi.oeaw.ac.at/software/mendel/29_04_2013/software/EasyBuild/1.13.0/lib64/python2.6/site-packages:/home/GMI/petar.forai/.local/lib64/python2.6/site-packages:/home/GMI/petar.forai/.local:/home/GMI/petar.forai/.local/lib64/python2.6/site-packages:/home/GMI/petar.forai/.local::
PYTHONSTARTUP = /etc/pythonstart
QT_SYSTEM_DIR = /usr/share/desktop-data
SAMPLES_HOME = /net/gmi.oeaw.ac.at/software/samples
SCRATCH = /lustre/scratch
SHELL = /bin/bash
SHLVL = 2
SOFT_HOME = /net/gmi.oeaw.ac.at/software/mendel/intel-x86_64-sandybridge-avx
SSH_CLIENT = 10.60.30.26 54164 22
SSH_CONNECTION = 10.60.30.26 54164 10.60.70.10 22
SSH_TTY = /dev/pts/59
TERM = xterm-256color
USER = petar.forai
WINDOWMANAGER = /usr/bin/gnome
WORK = /lustre/scratch/users/petar.forai/
WORKDIR = /lustre/scratch/users/petar.forai/
XAUTHLOCALHOSTNAME = login0
XCURSOR_THEME = crystalwhite
XDG_CONFIG_DIRS = /etc/xdg
XDG_DATA_DIRS = /usr/share:/etc/opt/kde3/share:/opt/kde3/share
XKEYSYMDB = /usr/share/X11/XKeysymDB
XNLSPATH = /usr/share/X11/nls
_ = /usr/bin/python
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Samtools needs a little patch (same patch that is in EB already) to look for ncurses instead of curses.