Useful batch script file

Batch.sh

#!/bin/bash
CODEFOLDER=/home/jonesph/MCComparison/Electrons/RAT
DATAFOLDER=/data/snoplus/jonesph/MCComparisonData
TEMPFOLDER=$TMPDIR
source /home/jonesph/snoplusenv

file[1]=RAT5MeV

cd $TEMPFOLDER

for index in 1
do
  cp ${CODEFOLDER}/${file[index]}.mac .
  rat ${file[index]}.mac

  cp *.log ${DATAFOLDER}/${file[index]}.log
  cp *.root ${DATAFOLDER}/

  rm *.log
  rm *.root
done

cd $DATAFOLDER
root .X ${CODEFOLDER}/Extract.c

echo done