gistfile1.js

jQuery( function () {
	My_Object.init( params );
} );

(function ( $, app ) {
	/**
	 * A variable
	 */
	app.var = 42;

	/**
	 * Bootstrap
	 */
	app.init = function( params ) {

		// Do stuff
	};

	/**
	 * Another function
	 */
	app.another_function = function( params ) {
		//do more stuff
	};

	/**
	 * Events object
	 */
	app.events = {

		clickHandler : function() {
			//something
		},

		formSubmitHandler : function() {
			//something
		}
	}

})( jQuery, window.My_Object || ( window.My_Object = {} ) );