[ Launch: Tributary inlet ] 6513093 by phantomas1234
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from cameo import Model, Reaction | |
from re import sub | |
def decompartmentalize(model, rules=None): | |
if rules is None: | |
rules = {} | |
compartmentless_model = Model() | |
for reaction in model.reactions: | |
new_reaction = reaction.copy() | |
new_reaction.clear_metabolites() | |
new_metabolites = {} |
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import time | |
from IProgress import ProgressBar, RotatingMarker, UnknownLength, AnimatedMarker | |
from IProgress.widgets import FormatLabel | |
FormatLabel | |
pbar = ProgressBar(widgets=[AnimatedMarker(markers="◐◓◑◒")]) | |
pbar.start() | |
for i in range(30): | |
time.sleep(.1) | |
pbar.update(i) |
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syntax enable |
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#PBS -S /bin/bash | |
#PBS -l nodes={n/2}:ppn=2 | |
#PBS -l walltime=3:00:00,pvmem=10GB | |
#PBS -N ipc | |
#PBS -q usplanck | |
#PBS -j oe | |
#PBS -o ipc.out | |
#PBS -A usplanck | |
#PBS -V |
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<!DOCTYPE html> | |
<meta charset="utf-8"> | |
Hello, world! |
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saveWorkspace[path_String:"/Users/niko/tmp"]:=Module[{fileName}, | |
fileName=StringJoin[Sequence@@Riffle[{"Workspace",ToString@Hash[Flatten[List@@("FileName"/.NotebookInformation[])[[1;;2]]],"MD5"],ToString[Round[AbsoluteTime[]]],".mx"},"_"]]; | |
DumpSave[FileNameJoin[{path,fileName}],"Global`"]; | |
]; | |
loadWorkspace[path_String:"/Users/niko/tmp"]:=Module[{currentNotebookHash,paths}, | |
currentNotebookHash=ToString@Hash[Flatten[List@@("FileName"/.NotebookInformation[])[[1;;2]]],"MD5"]; | |
paths=SortBy[ToExpression[StringSplit[#,"_"][[-2]]]->#&/@FileNames["Workspace*"<>currentNotebookHash<>"*.mx",{path}],First]; | |
Get[paths[[-1,2]]]; | |
]; |
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Process: Python [62083] | |
Path: /usr/local/Cellar/python/2.7.5/Frameworks/Python.framework/Versions/2.7/Resources/Python.app/Contents/MacOS/Python | |
Identifier: Python | |
Version: 2.7.5 (2.7.5) | |
Code Type: X86-64 (Native) | |
Parent Process: Python [62077] | |
Responsible: Python [62077] | |
User ID: 502 | |
Date/Time: 2014-01-16 13:42:13.065 +0100 |
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from PdbSublimeTextSupport import preloop, precmd | |
pdb.Pdb.preloop = preloop | |
pdb.Pdb.precmd = precmd | |
try: | |
from ipdb.__main__ import Pdb as ipdb_Pdb | |
except ImportError: | |
pass | |
else: |
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.DS_Store | |
strains.csv | |
strain_lineage.nb |
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