Cgroups is a flexible Linux kernel feature to limit, police and account resources usage. A cgroup is a set of tasks for a subsystems, that is typically a resource controller.
A file system of type cgroup is mounted and all operations are run over it.
The installation can be done using any of libcgroup, cgmanager or systemd.
| #Usage: conda-find.sh my-lost-package my-version | |
| conda info --envs | | |
| grep -v "#" | | |
| sed 's/\s\+/\t/' | | |
| cut -f2 | | |
| sed '/^$/d' | | |
| sed 's/^\*\s\+//' | | |
| while read line; do | |
| conda list -p $line | |
| import streamlit as st | |
| import io | |
| import contextlib | |
| import sys | |
| import re | |
| import threading | |
| class _Redirect: | |
| class IOStuff(io.StringIO): |
| # in zenodo ui create a deposition. get the id | |
| curl -H "Accept: application/json" -H "Authorization: Bearer $TOKEN" "https://www.zenodo.org/api/deposit/depositions/$DEPOSITION" | |
| # get the bucket id from above | |
| curl --progress-bar -o /dev/null --upload-file ./$FILE https://www.zenodo.org/api/files/$BUCKET/$FILE?access_token=$TOKEN |
| *bcftools filter | |
| *Filter variants per region (in this example, print out only variants mapped to chr1 and chr2) | |
| qbcftools filter -r1,2 ALL.chip.omni_broad_sanger_combined.20140818.snps.genotypes.hg38.vcf.gz | |
| *printing out info for only 2 samples: | |
| bcftools view -s NA20818,NA20819 filename.vcf.gz | |
| *printing stats only for variants passing the filter: | |
| bcftools view -f PASS filename.vcf.gz |
| #!/bin/bash | |
| mkdir /tmp/adodefont | |
| cd /tmp/adodefont | |
| mkdir -p ~/.fonts | |
| wget https://github.com/adobe-fonts/source-code-pro/archive/2.030R-ro/1.050R-it.zip | |
| unzip 1.050R-it.zip | |
| cp source-code-pro-2.030R-ro-1.050R-it/OTF/*.otf ~/.fonts/ | |
| wget https://github.com/adobe-fonts/source-serif-pro/archive/2.000R.zip |
| # Create empty branch. | |
| git checkout --orphan review | |
| git rm -rf . | |
| git commit --allow-empty -m "Create empty branch" | |
| git push --set-upstream origin review | |
| # Create `project` branch from `master` current state. | |
| git checkout -b project | |
| git merge master --allow-unrelated-histories | |
| git push --set-upstream origin project |
Download the uniref90 xml file first (warning - this is ~15 GB, will take a while)
| #!/usr/bin/env perl | |
| =head1 [progam_name] | |
| description: | |
| - converts tped files to hapmap files. | |
| =head2 usage |
##GTR lset applyto=() nst=6 # GTR lset applyto=() nst=6 rates=propinv # GTR + I lset applyto=() nst=6 rates=gamma # GTR + gamma lset applyto=() nst=6 rates=invgamma # GTR + I + gamma
##SYM
lset applyto=() nst=6 # SYM
prset applyto=() statefreqpr=fixed(equal)