Build on CentOS 6...

gistfile1.txt

# Run the following by a CentOS either starting one locally with:
# docker run -v $PWD:/host -ti centos:6.9 /bin/bash
# or start a GCE instance: 
# gcloud beta compute instances create "${USER}-centos-6-2" --scopes "compute-rw,storage-full,cloud-platform" --image-family "centos-6" --image-project "centos-cloud" --machine-type "custom-64-131072" --boot-disk-size "300" --boot-disk-type "pd-ssd" --zone "us-west1-b"


echo === Install prereqs
yum -y install sudo
sudo yum -y install wget


echo === Get GCC 4.8+ because CLIF needs it
sudo yum install -y centos-release-scl
sudo yum install -y devtoolset-3-toolchain
scl enable devtoolset-3 bash

# (1) Run: https://gist.github.com/pichuan/b1b29e805e681adeb819a20520db5c6a
# (2) Run: https://gist.github.com/pichuan/738a1c7d0c90aca17cc523e4764571fe
# (3) Run: https://gist.github.com/pichuan/5f8828b385087cd1e6df219b07cd825e (might need to paste manually)

# Then:
# git clone https://github.com/google/deepvariant.git; cd deepvariant
# and use the following scripts to replace:
# build-prereq.sh: https://gist.github.com/pichuan/7928d101a730c03167b6d80c9c3c58ac
# run-prereq.sh: https://gist.github.com/pichuan/f3df0da7db6f4e1385dca82423454ff3
# After running the modified build-prereq.sh, I ran build_and_test.sh,
# and also stuck at the error that's reported here: https://github.com/google/deepvariant/issues/29#issuecomment-386250002