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@lassoan
lassoan / volumeAugment.py
Last active August 31, 2023 10:25
Training data augmentation with random volume translation, rotation, and deformation
# This script randomly warps a 3D volume and adds random translations, rotations,
# and save each resulting 3D volume (and a screenshot for quick overview)
#
# The script can be executed by copy-pasting into 3D Slicer's Python console
# or in a Jupyter notebook running 3D Slicer kernel (provided by SlicerJupyter extension).
#
# Prerequisites:
# - Recent Slicer-4.11 version
# - SlicerIGT extension installed (for random deformations)
@mollymerp
mollymerp / sshfs-gcp-instance-osx.md
Last active January 10, 2024 14:52
How to mount a GCP compute instance filesystem locally using `sshfs` on MacOS

How to mount a GCP compute instance filesystem locally using sshfs

This guide assumes that:

  • you already have an instance set up on GCP that you want to mount locally
  • the GCP CLI (gcloud) is installed on your local machine
  • you have authenticated locally to your google account gcloud auth login
  1. make sure your gcloud config is correct for the instance you're trying to access: