Steve Pieper pieper
pieper
/ renderSmooth
Created
September 17, 2014 23:06
render a smoothed image by supersampling - hack for slicer4
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| lm = slicer.app.layoutManager() | |
| tw = lm.threeDWidget(0) | |
| tv = tw.threeDView() | |
| rw = tv.renderWindow() | |
| ren = rw.GetRenderers().GetItemAsObject(0) | |
| wti = vtk.vtkWindowToImageFilter() | |
| wti.SetMagnification(4) | |
pieper
/ requireHack
Created
April 5, 2015 13:23
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| var current = document.createElement('p'); | |
| document.body.appendChild(current); |
pieper
/ DICOMProcesses.py
Last active
December 14, 2015 15:29
Possible fix for this issue: http://slicer-users.65878.n3.nabble.com/dcmdump-and-sh-with-DICOM-Module-td4025942.html
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| import os | |
| import slicer | |
| from __main__ import qt | |
| from __main__ import ctk | |
| ######################################################### | |
| # | |
| # | |
| comment = """ |
pieper
/ decruft.py
Last active
December 20, 2015 18:38
decruft.py - does some math morphology operations to clean up a segmentation so that only the big connected regions are kept.
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| """ | |
| Run this with a label map loaded in the slicer editor. | |
| Change this path to be wherever you save this file and then paste | |
| the line into the slicer python console: | |
| execfile('/Users/pieper/Dropbox/hacks/slicer/decruft.py') | |
| This script will apply the algorithm and display the result. | |
| You can use the editor's undo operation to get back to the |
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| """ | |
| The following can be pasted into the python console to examine the headers | |
| of all the dicom objects in the database | |
| """ | |
| import DICOMLib | |
| parent = qt.QWidget() | |
| layout = qt.QVBoxLayout() | |
| parent.setLayout(layout) |
pieper
/ gist:59de820ad08cf3c0f7a33926397e612d
Created
January 30, 2017 14:47
slicer-qt5 mac build work in progress
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| diffs: | |
| #6 Slicer (support-qt5 *$>)$ git diff | |
| diff --git a/Base/QTGUI/qSlicerWebWidget.h b/Base/QTGUI/qSlicerWebWidget.h | |
| index 4eb852681..362115fd8 100644 | |
| --- a/Base/QTGUI/qSlicerWebWidget.h | |
| +++ b/Base/QTGUI/qSlicerWebWidget.h | |
| @@ -40,7 +40,8 @@ class QWebEngineView; | |
| #endif |
pieper
/ AG-export.py
Created
July 31, 2017 20:35
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| import os | |
| import WebServer | |
| tracts = ['AF', 'CST_M1', 'IFOF', 'ILF', 'UF']; | |
| exportDirectory = '/Volumes/encrypted/data/AG/AG1611-SlicerWeb/tracts' | |
| targetTubeCount = 100 | |
| for tract in tracts: | |
| tubeNodes = slicer.util.getNodes('vtkMRMLFiberBundleTubeDisplayNode*', useLists=True).values() | |
| for tubeNode in tubeNodes[0]: |
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| >>> o = vtk.vtkOBJExporter() | |
| >>> o.SetFilePrefix('/tmp/obj/fibers') | |
| >>> lm = slicer.app.layoutManager() | |
| >>> tdv = lm.threeDWidget(0).threeDView() | |
| >>> rw = tdv.renderWindow() | |
| >>> o.SetRenderWindow(rw) | |
| >>> o.Write() |
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| // This can be pasted into the wip-add-dcmjs branch of git@github.com:ohif/Viewers | |
| // to store current length measurements back to the source DICOMweb server. | |
| function parametersFromImageId(imageId) { | |
| const decodedImageId = decodeURIComponent(imageId); | |
| return(new URLSearchParams(decodedImageId)); | |
| } | |
| function parametersFromToolState() { | |
| const imageToolState = cornerstoneTools.globalImageIdSpecificToolStateManager.saveToolState(); |
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| <!DOCTYPE html> | |
| <html> | |
| <head> | |
| <meta charset="UTF-8"> | |
| <title>dcmjs-example - iodide</title> | |
| <link rel="stylesheet" type="text/css" href="https://iodide.io/stable/iodide.stable.css"> | |
| </head> | |
| <body> | |
| <script id="jsmd" type="text/jsmd"> | |
| %% meta |
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