pipitone/gist:6213772

## gistfile1.sh
#!/bin/bash
filename=$1
datafile=$2

IFS=','    # splits rows by commas
while read ID symb chr start stop; do
  cat $datafile | awk "(\$2==$chr) && (\$3>=$start) && (\$3<=$stop) {print}"
done < $filename > PGC1_315immunegenetest.txt
	#!/bin/bash
	filename=$1
	datafile=$2

	IFS=',' # splits rows by commas
	while read ID symb chr start stop; do
	cat $datafile \| awk "(\$2==$chr) && (\$3>=$start) && (\$3<=$stop) {print}"
	done < $filename > PGC1_315immunegenetest.txt