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3Dmol.js + Alphafold2 plDDT
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| //<html> | |
| //<script src="//code.jquery.com/jquery-3.6.0.js"></script> | |
| //<script src="https://3Dmol.csb.pitt.edu/build/3Dmol-min.js""></script> | |
| let element = $('#your_html_div_tag_id'); | |
| let config = { backgroundColor: 'mintcream' }; | |
| let viewer = $3Dmol.createViewer( element, config ); | |
| let pdb_file = '/path/to/alphafold2/results_file.pdb' | |
| let colorAlpha = function(atom) { | |
| if (atom.b < 50 ) { | |
| return 'OrangeRed'; | |
| } else if (atom.b < 70) { | |
| return 'Gold'; | |
| } else if (atom.b < 90) { | |
| return 'MediumTurquoise'; | |
| } else { | |
| return 'Blue'; | |
| } | |
| }; | |
| $.ajax(pdb_file, { | |
| success: function(data) { | |
| let v = viewer; | |
| v.addModel( data, "pdb" ); | |
| v.setStyle({}, {cartoon: {colorfunc: colorAlpha}}); | |
| v.zoomTo(); | |
| v.render(); | |
| v.zoom(1.2, 1000); | |
| }, | |
| error: function(hdr, status, err) { | |
| console.error( "Failed to load PDB " + pdb_file + ": " + err ); | |
| }, | |
| }); |
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