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BEGIN { | |
FS="\t" | |
OFS="," | |
genect = 0 | |
} | |
# filter the comments | |
$0 ~ /^#/ { next } | |
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# Prepends "VNII_" in front of every sequence ID in this genome | |
seqkit replace -p ^ -r VNII_ GCA_022832995.1_ASM2283299v1_genomic.fna > VNII_Genome.fasta |
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use std::error::Error; | |
use std::io::{BufRead, BufReader}; | |
#[derive(Debug)] | |
struct Record<'a> { | |
line: &'a str, | |
words: Vec<&'a str>, | |
} | |
impl<'a> Record<'a> { |
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use std::error::Error; | |
use std::io::{BufRead, BufReader}; | |
#[derive(Debug)] | |
struct Record<'a> { | |
line: &'a str, | |
words: Vec<&'a str>, | |
} | |
impl<'a> Record<'a> { |
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use std::env; | |
use std::error::Error; | |
use std::fs::File; | |
use std::io::{BufRead, BufReader}; | |
use std::time::Instant; | |
#[derive(Debug)] | |
struct Record { | |
words: Vec<String>, | |
} |
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package main | |
import ( | |
"bufio" | |
"fmt" | |
"io" | |
"log" | |
"os" | |
"strings" | |
"time" |
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library(dendextend) | |
library(tidyr) | |
library(dplyr) | |
library(magrittr) | |
library(ggplot2) | |
# load data in "wide" format (genes in columns) | |
spellman <- read.csv("spellman-reformated.csv") | |
# restructure in "long" format |
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library(tidyr) | |
library(dplyr) | |
library(magrittr) | |
library(ggplot2) | |
# read data from causton heat expression data set | |
# see groups 4 and 9 data/focal papers | |
causton <- read.csv("causton-2001-heat-expression.csv") | |
# Take a look at data. You'll see that the genes are in rows, |
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library(tidyr) | |
library(dplyr) | |
library(magrittr) | |
library(ggplot2) | |
# load data in "wide" format (genes in columns) | |
spellman <- read.csv("spellman-reformated.csv") | |
# restructure in "long" format | |
spellman.long <- gather(spellman, gene, expression, -expt, -time) |
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library(tidyr) | |
library(dplyr) | |
library(magrittr) | |
library(ggplot2) | |
# load data in "wide" format (genes in columns) | |
spellman <- read.csv("spellman-reformated.csv") | |
# restructure in "long" format | |
spellman.long <- gather(spellman, gene, expression, -expt, -time) |
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