Created
December 30, 2013 19:23
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2013-12-30 11:38] torque-node172-16-1-250: Cufflinks on /glusterfs/users/jporter/scale/hg19_scale_project/work2/align/HG00109_1_M_120209_4/3_131109_hg19_scale_project_tophat/3_131109_hg19_scale_project | |
-sort.bam. | |
[2013-12-30 11:38] torque-node172-16-1-250: [05:38:07] Loading reference annotation and sequence. | |
[2013-12-30 12:41] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chr17_ctg5_hap1'! | |
[2013-12-30 12:41] torque-node172-16-1-250: This contig will not be bias corrected. | |
[2013-12-30 12:41] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chr17_gl000205_random'! | |
[2013-12-30 12:41] torque-node172-16-1-250: This contig will not be bias corrected. | |
[2013-12-30 12:48] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chr19_gl000209_random'! | |
[2013-12-30 12:48] torque-node172-16-1-250: This contig will not be bias corrected. | |
[2013-12-30 12:48] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chr1_gl000191_random'! | |
[2013-12-30 12:48] torque-node172-16-1-250: This contig will not be bias corrected. | |
[2013-12-30 12:48] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chr1_gl000192_random'! | |
[2013-12-30 12:48] torque-node172-16-1-250: This contig will not be bias corrected. | |
[2013-12-30 13:34] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chr4_ctg9_hap1'! | |
[2013-12-30 13:34] torque-node172-16-1-250: This contig will not be bias corrected. | |
[2013-12-30 13:34] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chr4_gl000193_random'! | |
[2013-12-30 13:34] torque-node172-16-1-250: This contig will not be bias corrected. | |
[2013-12-30 13:34] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chr4_gl000194_random'! | |
[2013-12-30 13:34] torque-node172-16-1-250: This contig will not be bias corrected. | |
[2013-12-30 13:54] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chr6_apd_hap1'! | |
[2013-12-30 13:54] torque-node172-16-1-250: This contig will not be bias corrected. | |
[2013-12-30 13:54] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chr6_cox_hap2'! | |
[2013-12-30 13:54] torque-node172-16-1-250: This contig will not be bias corrected. | |
[2013-12-30 13:54] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chr6_dbb_hap3'! | |
[2013-12-30 13:54] torque-node172-16-1-250: This contig will not be bias corrected. | |
[2013-12-30 13:54] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chr6_mann_hap4'! | |
[2013-12-30 13:54] torque-node172-16-1-250: This contig will not be bias corrected. | |
[2013-12-30 13:54] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chr6_mcf_hap5'! | |
[2013-12-30 13:54] torque-node172-16-1-250: This contig will not be bias corrected. | |
[2013-12-30 13:54] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chr6_qbl_hap6'! | |
[2013-12-30 13:54] torque-node172-16-1-250: This contig will not be bias corrected. | |
[2013-12-30 13:54] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chr6_ssto_hap7'! | |
[2013-12-30 13:54] torque-node172-16-1-250: This contig will not be bias corrected. | |
[2013-12-30 14:02] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chr7_gl000195_random'! | |
[2013-12-30 14:02] torque-node172-16-1-250: This contig will not be bias corrected. | |
[2013-12-30 14:20] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chrUn_gl000211'! | |
[2013-12-30 14:20] torque-node172-16-1-250: This contig will not be bias corrected. | |
[2013-12-30 14:20] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chrUn_gl000212'! | |
[2013-12-30 14:20] torque-node172-16-1-250: This contig will not be bias corrected. | |
[2013-12-30 14:20] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chrUn_gl000213'! | |
[2013-12-30 14:20] torque-node172-16-1-250: This contig will not be bias corrected. | |
[2013-12-30 14:20] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chrUn_gl000218'! | |
[2013-12-30 14:20] torque-node172-16-1-250: This contig will not be bias corrected. | |
[2013-12-30 14:20] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chrUn_gl000219'! | |
[2013-12-30 14:20] torque-node172-16-1-250: This contig will not be bias corrected. | |
[2013-12-30 14:20] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chrUn_gl000220'! | |
[2013-12-30 14:20] torque-node172-16-1-250: This contig will not be bias corrected. | |
[2013-12-30 14:20] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chrUn_gl000222'! | |
[2013-12-30 14:20] torque-node172-16-1-250: This contig will not be bias corrected. | |
[2013-12-30 14:20] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chrUn_gl000223'! | |
[2013-12-30 14:20] torque-node172-16-1-250: This contig will not be bias corrected. | |
[2013-12-30 14:20] torque-node172-16-1-250: Warning: couldn't find fasta record for 'chrUn_gl000228'! | |
[2013-12-30 14:20] torque-node172-16-1-250: This contig will not be bias corrected. | |
[2013-12-30 14:31] torque-node172-16-1-250: [08:31:45] Loading reference annotation. | |
[2013-12-30 14:31] torque-node172-16-1-250: [08:31:45] Inspecting reads and determining fragment length distribution. |
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