Created
June 7, 2022 15:22
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translating sparse arff files to sparse parquet files for OpenML
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#Code for entire dataset to pyarrow table | |
import pyarrow as pa | |
import pyarrow.parquet as pq | |
# getting the dataset | |
did=39947 | |
d = openml.datasets.get_dataset(did, download_qualities=False) | |
df , *_ = d.get_data(dataset_format="dataframe", include_row_id=True, include_ignore_attribute=True) | |
df = df[[f.name for f in d.features.values()]] | |
# converting every column to pyarrow array | |
parr_array = [] | |
names = [] | |
for i in range(len(df.columns)): | |
arr = np.asarray(df[df.columns[i]]) | |
mask = [] | |
for val in arr:#Mask of null values | |
if val==df[df.columns[i]].dtype._fill_value: | |
mask.append(True) | |
else: | |
mask.append(False) | |
mask = np.asarray(mask) | |
parr = pyarrow.array(arr, from_pandas=True,mask=mask) | |
parr_array.append(parr) | |
names.append(df.columns[i]) | |
table = pa.table(parr_array, names=names) | |
pq.write_table(table, 'df.parquet') | |
import pandas as pd | |
df_new = pd.read_parquet('df.parquet') |
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