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simplistic kmeans implementation
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#include <cfloat> | |
#include <armadillo> | |
using namespace arma; | |
/** | |
* K-means algorithm | |
* @param K the number of clusters | |
* @param means cluster centers | |
* @param counts sizes of clusters | |
* @param resps assignments to clusters | |
* @return the number of iterations till convergence | |
*/ | |
inline size_t kmeans(const vec &data, size_t K, size_t max_iters, vec &means, ivec &assigns, double EPS = 1.0e-5) | |
{ | |
const size_t N = data.size(); | |
ivec counts(K); | |
vec new_means(K); | |
means.resize(K); | |
assigns.resize(N); | |
// random initialisation | |
for (size_t k = 0; k < K; ++k) | |
means[k] = data[rand() % N]; | |
size_t iters = 0; | |
bool converged = false; | |
for (iters = 0; (iters < max_iters) && !converged; ++iters) | |
{ | |
new_means.fill(0.0); | |
counts.fill(0); | |
for (size_t p = 0; p < N; ++p) | |
{ | |
size_t cluster = 0; | |
double cluster_dist = DBL_MAX; | |
for (size_t k = 0; k < K; ++k) | |
{ | |
double dist = fabs(data[p] - means[k]); | |
if (dist <= cluster_dist) | |
{ | |
cluster = k; | |
cluster_dist = dist; | |
} | |
} | |
assigns[p] = cluster; | |
++counts[cluster]; | |
new_means[cluster] += data[p]; | |
} | |
converged = true; | |
for (size_t k = 0; k < K; ++k) | |
{ | |
if (counts[k] == 0) | |
continue; | |
double m = new_means[k] / counts[k]; | |
converged &= fabs(m - means[k]) < EPS; | |
means[k] = m; | |
} | |
} | |
return iters; | |
} |
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