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June 28, 2017 08:16
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sample_node error
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--------------------------------------------------------------------------- | |
MethodNotDefined Traceback (most recent call last) | |
theano/scan_module/scan_perform.pyx in theano.scan_module.scan_perform.perform (/home/edward/.theano/compiledir_Linux-4.11--ARCH-x86_64-with-debian-stretch-sid-x86_64-3.5.3-64/scan_perform/mod.cpp:4490)() | |
/opt/conda/lib/python3.5/site-packages/theano/gof/op.py in rval(p, i, o, n, params) | |
880 params=params_val): | |
--> 881 r = p(n, [x[0] for x in i], o, params) | |
882 for o in node.outputs: | |
/opt/conda/lib/python3.5/site-packages/theano/gof/op.py in perform(self, node, inputs, output_storage, params) | |
777 "perform", type(self), self.__class__.__name__, | |
--> 778 "Did you used Theano flags mode=FAST_COMPILE?" | |
779 " You can use optimizer=fast_compile instead.") | |
MethodNotDefined: ('perform', <class 'theano.gpuarray.elemwise.GpuElemwise'>, 'GpuElemwise', 'Did you used Theano flags mode=FAST_COMPILE? You can use optimizer=fast_compile instead.') | |
During handling of the above exception, another exception occurred: | |
MethodNotDefined Traceback (most recent call last) | |
<ipython-input-8-a6610b5541b7> in <module>() | |
3 mu = pm.Gamma('U',1,1,shape=3)).logp(theano.shared(np.arange(3))) | |
4 inference = pm.ADVI() | |
----> 5 inference.approx.sample_node(val) | |
/opt/conda/lib/python3.5/site-packages/pymc3/variational/opvi.py in sample_node(self, node, size, more_replacements) | |
729 | |
730 def sample(z): return theano.clone(node, {self.input: z}, strict=False) | |
--> 731 nodes, _ = theano.scan(sample, posterior, n_steps=size) | |
732 return nodes | |
733 | |
/opt/conda/lib/python3.5/site-packages/theano/scan_module/scan.py in scan(fn, sequences, outputs_info, non_sequences, n_steps, truncate_gradient, go_backwards, mode, name, profile, allow_gc, strict, return_list) | |
1069 pass | |
1070 scan_inputs += [arg] | |
-> 1071 scan_outs = local_op(*scan_inputs) | |
1072 if type(scan_outs) not in (list, tuple): | |
1073 scan_outs = [scan_outs] | |
/opt/conda/lib/python3.5/site-packages/theano/gof/op.py in __call__(self, *inputs, **kwargs) | |
672 thunk.outputs = [storage_map[v] for v in node.outputs] | |
673 | |
--> 674 required = thunk() | |
675 assert not required # We provided all inputs | |
676 | |
/opt/conda/lib/python3.5/site-packages/theano/scan_module/scan_op.py in rval(p, i, o, n, allow_gc) | |
987 def rval(p=p, i=node_input_storage, o=node_output_storage, n=node, | |
988 allow_gc=allow_gc): | |
--> 989 r = p(n, [x[0] for x in i], o) | |
990 for o in node.outputs: | |
991 compute_map[o][0] = True | |
/opt/conda/lib/python3.5/site-packages/theano/scan_module/scan_op.py in p(node, args, outs) | |
976 args, | |
977 outs, | |
--> 978 self, node) | |
979 except (ImportError, theano.gof.cmodule.MissingGXX): | |
980 p = self.execute | |
theano/scan_module/scan_perform.pyx in theano.scan_module.scan_perform.perform (/home/edward/.theano/compiledir_Linux-4.11--ARCH-x86_64-with-debian-stretch-sid-x86_64-3.5.3-64/scan_perform/mod.cpp:4606)() | |
/opt/conda/lib/python3.5/site-packages/theano/gof/link.py in raise_with_op(node, thunk, exc_info, storage_map) | |
323 # extra long error message in that case. | |
324 pass | |
--> 325 reraise(exc_type, exc_value, exc_trace) | |
326 | |
327 | |
/opt/conda/lib/python3.5/site-packages/six.py in reraise(tp, value, tb) | |
683 value = tp() | |
684 if value.__traceback__ is not tb: | |
--> 685 raise value.with_traceback(tb) | |
686 raise value | |
687 | |
theano/scan_module/scan_perform.pyx in theano.scan_module.scan_perform.perform (/home/edward/.theano/compiledir_Linux-4.11--ARCH-x86_64-with-debian-stretch-sid-x86_64-3.5.3-64/scan_perform/mod.cpp:4490)() | |
/opt/conda/lib/python3.5/site-packages/theano/gof/op.py in rval(p, i, o, n, params) | |
879 def rval(p=p, i=node_input_storage, o=node_output_storage, n=node, | |
880 params=params_val): | |
--> 881 r = p(n, [x[0] for x in i], o, params) | |
882 for o in node.outputs: | |
883 compute_map[o][0] = True | |
/opt/conda/lib/python3.5/site-packages/theano/gof/op.py in perform(self, node, inputs, output_storage, params) | |
776 raise utils.MethodNotDefined( | |
777 "perform", type(self), self.__class__.__name__, | |
--> 778 "Did you used Theano flags mode=FAST_COMPILE?" | |
779 " You can use optimizer=fast_compile instead.") | |
780 | |
MethodNotDefined: ('perform', <class 'theano.gpuarray.elemwise.GpuElemwise'>, 'GpuElemwise', 'Did you used Theano flags mode=FAST_COMPILE? You can use optimizer=fast_compile instead.') | |
Apply node that caused the error: Gpugammaln(GpuElemwise{add,no_inplace}.0) | |
Toposort index: 5 | |
Inputs types: [GpuArrayType<None>(int64, (False,))] | |
Inputs shapes: [(3,)] | |
Inputs strides: [(8,)] | |
Inputs values: [gpuarray.array([1, 2, 3])] | |
Inputs type_num: [7] | |
Outputs clients: [[GpuElemwise{Composite{Switch((EQ(i0, i1) * EQ(i2, i3)), i4, Switch(Identity((GE(i5, i6) * GE(i2, i7))), ((Switch(EQ(i0, i1), i8, (i2 * log(i9))) - i10) - i11), i12))}}[(0, 10)]<gpuarray>(GpuFromHost<None>.0, GpuArrayConstant{[0]}, GpuFromHost<None>.0, GpuArrayConstant{[0]}, GpuArrayConstant{[0]}, GpuFromHost<None>.0, GpuArrayConstant{[0]}, GpuArrayConstant{[0]}, GpuArrayConstant{[-inf]}, GpuFromHost<None>.0, Gpugammaln.0, GpuFromHost<None>.0, GpuArrayConstant{[-inf]})]] | |
Debugprint of the apply node: | |
Gpugammaln [id A] <GpuArrayType<None>(float64, (False,))> '' | |
|GpuElemwise{add,no_inplace} [id B] <GpuArrayType<None>(int64, (False,))> '' | |
|GpuArrayConstant{[1]} [id C] <GpuArrayType<None>(int64, (True,))> | |
|GpuFromHost<None> [id D] <GpuArrayType<None>(int64, (False,))> '' | |
|<TensorType(int64, vector)> [id E] <TensorType(int64, vector)> | |
HINT: Re-running with most Theano optimization disabled could give you a back-trace of when this node was created. This can be done with by setting the Theano flag 'optimizer=fast_compile'. If that does not work, Theano optimizations can be disabled with 'optimizer=None'. | |
HINT: Use the Theano flag 'exception_verbosity=high' for a debugprint and storage map footprint of this apply node. |
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