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@cyhsutw
cyhsutw / MathJax.ipynb
Last active October 20, 2025 06:05
Grabbed from https://github.com/odewahn/ipynb-examples, converted to v3 for GitHub to render.
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@peterk87
peterk87 / parseSNPs.py
Created January 13, 2014 22:52
Python: Parse SNPs from one or more multiple sequence alignments in multifasta format and output a concatenated SNP fasta, a basic SNP report, and/or [binarized] SNP table.
import argparse
import textwrap
import os
import sys
from datetime import timedelta, datetime
# function for reading a multifasta file
# returns a dictionary with sequence headers and nucleotide sequences
def get_seqs_from_fasta(filepath):