$ conda create --name stardist-gpu python=3.7 # Although now we have 3.9 but Conda's `gputools` requires 3.7 or less
$ conda activate stardist-gpu
$ conda install -c anaconda tensorflow-gpu
$ conda install -c talley gputools
$ conda install -c anaconda git # Just to `git checkout dev` for the `dev` branch
$ conda install -c anaconda natsort colorcet
$ git clone git@github.com:stardist/stardist.git
qin-yu
/ stardist-setup.md
Last active
September 14, 2021 12:25
qin-yu
/ useful-resourses.md
Created
October 30, 2020 13:05
- For people who sometimes jump from one language/env to another and forget syntax idiosyncrasies: Hyperpolyglot.
- Also a similar, more reference-style resource: Learn X in Y minutes
qin-yu
/ configure-ubuntu.md
Created
April 24, 2020 07:27
Qin Yu, Apr 2020
$ sudo apt install gnome-tweaks
$ sudo apt install gnome-shell-extensions
qin-yu
/ configure-regolith.md
Created
April 24, 2020 07:25
Qin Yu, Apr 2020
I gave up on Regolith simply because of its terrible mechanism of rearranging windows. I will come back when people deal with this issue.
This is my note on Regolith. The first thing you want to do is to remember this shortcut for help: Super+Shift+?
Regolith is a modern desktop environment designed to let you work faster by reducing unnecessary clutter and ceremony. Built on top of Ubuntu, GNOME, and i3, Regolith stands on a well-supported and consistent foundation.
qin-yu
/ jupyter-progress-bar.md
Created
April 11, 2020 10:10
How to Use Progress Bar in Jupyter Notebook (light blue bar with question mark denominator explained)
Qin Yu, Apr 2020
qin-yu
/ gpu-tf-ubuntu.md
Last active
April 28, 2024 19:39
Use TensorFlow with GPU support on Ubuntu
Docker is the easiest way to run TensorFlow on a GPU since the host machine only requires the NVIDIA® driver (the NVIDIA® CUDA® Toolkit is not required).
qin-yu
/ thunderbird-exchange.md
Last active
March 26, 2020 00:43
Using Microsoft Exchange Email and Calendar on Ubuntu with Thunderbird and Lightning
Take UCL's email as an example: Connecting Thunderbird using EWS will allow you to access the UCL Global Address List and UCL exchange calendar. You will need to have the following add-on’s installed in Thunderbird before setting up your UCL email account.
- ExQuilla for Microsoft Exchange (available from Thunderbird Add-Ons library)
- Lightning Calendar (available from Thunderbird Add-Ons library)
- Calendar EWS Provider (available from Treenine)
Note that the Calendar EWS Provider is NOT found in Thunderbird Add-Ons library.
qin-yu
/ configure-vscode.md
Last active
April 6, 2020 20:22
qin-yu
/ git-untrack.md
Last active
April 6, 2020 20:13
How to detect and delete large file throughout history
- Push and see what files are rejected:
Qin Yu, Apr 2020