quantixed

/*
 * Figure out the width of png images for Overleaf
 * png are 300 dpi and page width is 170 mm
 */

#@ File (label = "Input directory", style = "directory") input
#@ String (label = "File suffix", value = ".png") suffix

setBatchMode(true);
processFolder(input);

quantixed

[General]
IniMode=true

[formats]
data\align-ampersand\bold=true
data\align-ampersand\fontFamily=
data\align-ampersand\foreground=#dc8cc3
data\align-ampersand\italic=false
data\align-ampersand\overline=false
data\align-ampersand\pointSize=0

quantixed

/****************************************************************
 * Script to save a directory of ai files to PNG
 * Options are: white bakcground, 300 dpi and clipped to artboard
*****************************************************************/
var folder = Folder.selectDialog();
if (folder) {
    var files = folder.getFiles("*.ai");
    for (var i = 0; i < files.length; i++) {
        var currentFile = files[i];
        app.open(currentFile);

quantixed

## Setup preferred directory structure in wd
ifelse(!dir.exists("Data"), dir.create("Data"), "Folder exists already")
ifelse(!dir.exists("Output"), dir.create("Output"), "Folder exists already")
ifelse(!dir.exists("Output/Data"), dir.create("Output/Data"), "Folder exists already")
ifelse(!dir.exists("Output/Plots"), dir.create("Output/Plots"), "Folder exists already")
ifelse(!dir.exists("Script"), dir.create("Script"), "Folder exists already")

quantixed

/*
 * Short routine to save a single timepoint from a 2 channel movie
 * Used for knocksideways spindle analysis
 * Best done with "click ROI" square ROI over cell of interest
 */
dir = getDirectory("home")+"Desktop"+File.separator
winName = getTitle();
sliceNo =  round(getSliceNumber() / 2);
s = "title=[tempwin] duplicate frames=" + d2s(sliceNo,0);
run("Duplicate...", s);

quantixed

// calculates spherical distance between two points on earth given coords in decimal degrees
// uses haversine formula
// radius of earth is taken to be 6371 km (IUGG/WGS-84 mean)
Function SphericalDistanceBetweenTwoPoints(lat1, long1, lat2, long2)
    Variable lat1, long1, lat2, long2
    
    // convert inputs in degrees to radians
    lat1*= pi/180
    long1*= pi/180
    lat2*= pi/180

quantixed

function lutValuesToTable(filePath) {
	getLut(reds, greens, blues);
	tableTitle = "lutValueTable";
	eightBit = 256;
	run("Table...", "name=["+tableTitle+"] width=600 height=250");
	print("["+tableTitle+"]", "\\Headings:Index\tRed\tGreen\tBlue");
	for (i = 0; i < eightBit; i ++) {
		rowString = d2s(i,0) + "\t" + reds[i] + "\t" + greens[i] + "\t" + blues[i];
		print("["+tableTitle+"]", rowString);
	}

quantixed

Keybase proof

I hereby claim:

• I am quantixed on github.
• I am sjroyle (https://keybase.io/sjroyle) on keybase.
• I have a public key ASCWCcNewPuFelX38VrKNO9CBVZh967DT85XKS9rN7Hwjgo

To claim this, I am signing this object:

quantixed

tell application "TextEdit"
	set wc to count words of document 1
	set cc to count characters of document 1
	if wc is equal to 1 then
		set txt to " word, "
	else
		set txt to " words, "
	end if
	if cc is equal to 1 then
		set txtc to " character."