sharadmv

"""Module for the JAX progress bar."""
from __future__ import annotations
import abc
import threading
import types

from typing import Any, Callable, List, Optional, Set, Tuple, Type

import jax
import rich.console

andrewheiss

library(tidyverse)
library(kerasformula)
library(textfeatures)

tweets <- read_csv("https://raw.githubusercontent.com/fivethirtyeight/russian-troll-tweets/master/IRAhandle_tweets_1.csv", 
                   n_max = 25000) %>% 
  mutate(text = content)

features <- textfeatures(tweets, threads = 2)

ankurk91

Github : Signing commits using GPG (Ubuntu/Mac) 🔐

• Do you have an Github account ? If not create one.
• Install required tools
• Latest Git Client
• gpg tools

# Ubuntu
sudo apt-get install gpa seahorse
# MacOS with https://brew.sh/

PoisonAlien

#!/bin/bash
#
# AUTHOR: Anand M.
# RNA-Seq variant calling pieline accoring to GATK Best practices.
# https://www.broadinstitute.org/gatk/guide/article?id=3891
#
# Call with following arguments
# bash rna_seq_variant_pipeline.sh <Input_Reads1.fq.gz> <Input_Reads2.fq.gz> <output_basename>
# 
# Assumes STAR aligner is under path

obenshaindw

#GATK Method <- Slower and keeps original ID plut dbSNP rsID
# R=Reference FASTA
# V=VCF file to add IDs to
# --dbsnp = dbsnp VCF -- download from NCBI FTP

java -jar GenomeAnalysisTK.jar -R /reference/Homo_sapiens_assembly19.fasta -T VariantAnnotator -V vcf_to_add_id_to.vcf --dbsnp /reference/dbsnp_137.b37.vcf.gz --out /data/Broad.chr1.annotated.vcf

#bcftools Method <- Faster, replaces existing ID with dbSNP rsID
/usr/bin/htslib/bcftools/bcftools annotate -a /reference/dbsnp_137.b37.vcf.gz -c ID vcf_to_add_id_to.vcf