Skip to content

Instantly share code, notes, and snippets.

@qw3rtman

qw3rtman/gist:c568c1c1c3e882abfdbad11774880319

Created December 10, 2018 06:21
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save qw3rtman/c568c1c1c3e882abfdbad11774880319 to your computer and use it in GitHub Desktop.
Save qw3rtman/c568c1c1c3e882abfdbad11774880319 to your computer and use it in GitHub Desktop.
Download ZIP
trace for ksvm ptrain=0.01 ptest=1.0; 18.2% error
Raw
gistfile1.txt
(sk) nid00010(372)$ python ksvm.py ptrain=0.01 ptest=1.0
Kernel SVM
| Loading Images...
| | [0.02s | 0.06MB] loaded patient 16534
| | [0.02s | 0.09MB] loaded patient 12241
| | [0.02s | 0.09MB] loaded patient 14078
| | [0.03s | 0.12MB] loaded patient 13458
| | [0.03s | 0.15MB] loaded patient 9347
| | [0.03s | 0.09MB] loaded patient 14212
| | [0.03s | 0.06MB] loaded patient 8957
| | [0.04s | 0.18MB] loaded patient 13687
| | [0.04s | 0.15MB] loaded patient 9124
| | [0.04s | 0.15MB] loaded patient 14081
| | [0.04s | 0.09MB] loaded patient 12876
| | [0.04s | 0.21MB] loaded patient 10258
| | [0.04s | 0.21MB] loaded patient 13692
| | [0.04s | 0.12MB] loaded patient 12811
| | [0.05s | 0.12MB] loaded patient 13023
| | [0.05s | 0.18MB] loaded patient 9083
| | [0.05s | 0.18MB] loaded patient 9022
| | [0.05s | 0.21MB] loaded patient 9344
| | [0.05s | 0.24MB] loaded patient 8865
| | [0.06s | 0.21MB] loaded patient 8951
| | [0.06s | 0.18MB] loaded patient 15471
| | [0.06s | 0.27MB] loaded patient 12909
| | [0.06s | 0.27MB] loaded patient 12884
| | [0.06s | 0.24MB] loaded patient 12822
| | [0.07s | 0.30MB] loaded patient 10304
| | [0.07s | 0.36MB] loaded patient 9037
| | [0.07s | 0.33MB] loaded patient 9041
| | [0.04s | 0.09MB] loaded patient 12883
| | [0.08s | 0.36MB] loaded patient 9176
| | [0.07s | 0.27MB] loaded patient 12901
| | [0.07s | 0.27MB] loaded patient 16568
| | [0.05s | 0.18MB] loaded patient 16532
| | [0.08s | 0.36MB] loaded patient 12242
| | [0.07s | 0.27MB] loaded patient 12869
| | [0.09s | 0.45MB] loaded patient 15473
| | [0.09s | 0.45MB] loaded patient 9259
| | [0.08s | 0.30MB] loaded patient 15513
| | [0.03s | 0.09MB] loaded patient 16531
| | [0.05s | 0.21MB] loaded patient 10286
| | [0.10s | 0.48MB] loaded patient 14154
| | [0.09s | 0.42MB] loaded patient 10260
| | [0.09s | 0.36MB] loaded patient 13691
| | [0.10s | 0.48MB] loaded patient 13019
| | [0.09s | 0.33MB] loaded patient 13106
| | [0.10s | 0.42MB] loaded patient 9257
| | [0.08s | 0.36MB] loaded patient 12955
| | [0.10s | 0.48MB] loaded patient 13613
| | [0.10s | 0.48MB] loaded patient 9225
| | [0.03s | 0.09MB] loaded patient 9044
| | [0.07s | 0.27MB] loaded patient 10254
| | [0.05s | 0.18MB] loaded patient 9383
| | [0.07s | 0.27MB] loaded patient 9291
| | [0.04s | 0.15MB] loaded patient 14209
| | [0.10s | 0.39MB] loaded patient 16166
| | [0.07s | 0.27MB] loaded patient 12870
| | [0.03s | 0.12MB] loaded patient 13617
| | [0.06s | 0.24MB] loaded patient 14188
| | [0.02s | 0.06MB] loaded patient 16167
| | [0.09s | 0.39MB] loaded patient 12810
| | [0.08s | 0.30MB] loaded patient 12930
| | [0.07s | 0.30MB] loaded patient 10293
| | [0.04s | 0.15MB] loaded patient 14213
| | [0.12s | 0.51MB] loaded patient 8867
| | [0.09s | 0.39MB] loaded patient 10264
| | [0.09s | 0.39MB] loaded patient 15515
| | [0.04s | 0.12MB] loaded patient 12881
| | [0.13s | 0.66MB] loaded patient 14211
| | [0.14s | 0.69MB] loaded patient 10308
| | [0.08s | 0.36MB] loaded patient 9254
| | [0.02s | 0.06MB] loaded patient 9262
| | [0.14s | 0.63MB] loaded patient 10290
| | [0.03s | 0.09MB] loaded patient 9035
| | [0.07s | 0.33MB] loaded patient 9261
| | [0.05s | 0.21MB] loaded patient 12898
| | [0.15s | 0.72MB] loaded patient 10288
| | [0.06s | 0.27MB] loaded patient 9023
| | [0.08s | 0.36MB] loaded patient 12752
| | [0.04s | 0.15MB] loaded patient 16569
| | [0.16s | 0.69MB] loaded patient 13693
| | [0.03s | 0.09MB] loaded patient 12871
| | [0.08s | 0.27MB] loaded patient 8914
| | [0.06s | 0.27MB] loaded patient 12949
| | [0.08s | 0.33MB] loaded patient 10306
| | [0.13s | 0.57MB] loaded patient 9320
| | [0.09s | 0.36MB] loaded patient 10269
| | [0.04s | 0.15MB] loaded patient 13020
| | [0.10s | 0.45MB] loaded patient 12878
| | [0.07s | 0.27MB] loaded patient 9227
| | [0.07s | 0.30MB] loaded patient 12817
| | [0.14s | 0.63MB] loaded patient 12934
| | [0.12s | 0.54MB] loaded patient 10279
| | [0.13s | 0.60MB] loaded patient 14155
| | [0.04s | 0.15MB] loaded patient 12879
| | [0.12s | 0.51MB] loaded patient 9029
| | [0.03s | 0.09MB] loaded patient 9175
| | [0.02s | 0.06MB] loaded patient 12948
| | [0.14s | 0.63MB] loaded patient 16165
| | [0.08s | 0.36MB] loaded patient 12820
| | [0.03s | 0.09MB] loaded patient 12892
| | [0.08s | 0.33MB] loaded patient 10307
| | [0.09s | 0.39MB] loaded patient 10291
| | [0.08s | 0.33MB] loaded patient 10275
| | [0.08s | 0.36MB] loaded patient 9177
| | [0.07s | 0.27MB] loaded patient 15634
| | [0.12s | 0.54MB] loaded patient 12910
| | [0.04s | 0.15MB] loaded patient 16555
| | [0.11s | 0.45MB] loaded patient 9173
| | [0.07s | 0.30MB] loaded patient 8913
| | [0.13s | 0.60MB] loaded patient 12880
| | [0.04s | 0.15MB] loaded patient 13403
| | [0.09s | 0.39MB] loaded patient 12951
| | [0.05s | 0.18MB] loaded patient 15633
| | [0.04s | 0.15MB] loaded patient 13688
| | [0.11s | 0.51MB] loaded patient 9123
| | [0.09s | 0.39MB] loaded patient 13694
| | [0.08s | 0.36MB] loaded patient 15840
| | [0.09s | 0.39MB] loaded patient 13021
| | [0.12s | 0.57MB] loaded patient 10262
| | [0.12s | 0.54MB] loaded patient 8974
| | [0.07s | 0.27MB] loaded patient 9135
| | [0.12s | 0.57MB] loaded patient 9078
| | [0.05s | 0.18MB] loaded patient 10256
| | [0.04s | 0.12MB] loaded patient 12877
| | [0.04s | 0.15MB] loaded patient 14306
| | [0.09s | 0.39MB] loaded patient 9250
| | [0.14s | 0.66MB] loaded patient 10299
| | [0.12s | 0.54MB] loaded patient 9265
| | [0.07s | 0.30MB] loaded patient 16570
| | [0.11s | 0.48MB] loaded patient 10300
| | [0.06s | 0.24MB] loaded patient 12824
| | [0.11s | 0.51MB] loaded patient 9077
| | [0.05s | 0.15MB] loaded patient 15632
| | [0.07s | 0.30MB] loaded patient 10277
| | [0.03s | 0.09MB] loaded patient 12933
| | [0.04s | 0.15MB] loaded patient 9260
| | [0.05s | 0.21MB] loaded patient 15514
| | [0.06s | 0.24MB] loaded patient 8980
| | [0.06s | 0.24MB] loaded patient 12893
| | [0.09s | 0.39MB] loaded patient 15902
| | [0.11s | 0.51MB] loaded patient 8918
| | [0.05s | 0.21MB] loaded patient 14210
| | [0.11s | 0.48MB] loaded patient 9290
| | [0.07s | 0.27MB] loaded patient 12872
| | [0.03s | 0.09MB] loaded patient 10255
| | [0.05s | 0.18MB] loaded patient 8955
| | [0.13s | 0.60MB] loaded patient 10305
| | [0.10s | 0.42MB] loaded patient 12935
| | [0.07s | 0.30MB] loaded patient 10274
| | [0.13s | 0.57MB] loaded patient 9075
| | [0.05s | 0.21MB] loaded patient 9125
| | [0.05s | 0.21MB] loaded patient 13401
| | [0.10s | 0.45MB] loaded patient 9178
| | [0.04s | 0.15MB] loaded patient 14082
| | [0.05s | 0.18MB] loaded patient 12886
| | [0.05s | 0.21MB] loaded patient 12931
| | [0.06s | 0.24MB] loaded patient 16554
| | [0.10s | 0.39MB] loaded patient 9381
| | [0.06s | 0.24MB] loaded patient 13025
| | [0.08s | 0.30MB] loaded patient 9076
| | [0.07s | 0.27MB] loaded patient 14304
| | [0.08s | 0.36MB] loaded patient 15510
| | [0.06s | 0.27MB] loaded patient 12932
| | [0.08s | 0.36MB] loaded patient 9325
| | [0.04s | 0.15MB] loaded patient 9319
| | [0.06s | 0.27MB] loaded patient 12897
| | [0.05s | 0.18MB] loaded patient 10253
| | [0.04s | 0.12MB] loaded patient 12748
| | [0.09s | 0.42MB] loaded patient 10303
| | [0.09s | 0.42MB] loaded patient 10285
| | [0.05s | 0.21MB] loaded patient 8950
| | [0.04s | 0.15MB] loaded patient 12882
| | [0.07s | 0.30MB] loaded patient 8917
| | [0.06s | 0.24MB] loaded patient 10257
| | [0.08s | 0.36MB] loaded patient 9181
| | [0.10s | 0.45MB] loaded patient 10292
| | [0.14s | 0.66MB] loaded patient 10268
| | [0.08s | 0.33MB] loaded patient 14192
| | [0.11s | 0.51MB] loaded patient 12818
| | [0.12s | 0.57MB] loaded patient 12751
| | [0.12s | 0.57MB] loaded patient 13462
| | [0.06s | 0.21MB] loaded patient 13461
| | [0.04s | 0.12MB] loaded patient 15839
| | [0.09s | 0.42MB] loaded patient 12626
| | [0.03s | 0.06MB] loaded patient 12929
| | [0.12s | 0.54MB] loaded patient 12819
| | [0.11s | 0.51MB] loaded patient 9126
| | [0.05s | 0.21MB] loaded patient 14321
| | [0.13s | 0.60MB] loaded patient 10302
| | [0.04s | 0.12MB] loaded patient 13018
| | [0.09s | 0.42MB] loaded patient 9036
| | [0.15s | 0.69MB] loaded patient 9323
| | [0.06s | 0.27MB] loaded patient 9043
| | [0.06s | 0.27MB] loaded patient 14153
| | [0.08s | 0.36MB] loaded patient 13459
| | [0.11s | 0.51MB] loaded patient 13916
| | [0.09s | 0.39MB] loaded patient 13400
| | [0.14s | 0.66MB] loaded patient 16551
| | [0.10s | 0.45MB] loaded patient 13616
| | [0.09s | 0.39MB] loaded patient 12905
| | [0.09s | 0.39MB] loaded patient 9266
| | [0.05s | 0.21MB] loaded patient 10261
| | [0.06s | 0.24MB] loaded patient 16553
| | [0.11s | 0.54MB] loaded patient 12906
| | [0.14s | 0.69MB] loaded patient 10272
| | [0.14s | 0.66MB] loaded patient 10273
| | [0.10s | 0.45MB] loaded patient 12867
| | [0.04s | 0.18MB] loaded patient 12896
| | [0.04s | 0.15MB] loaded patient 13666
| | [0.03s | 0.12MB] loaded patient 9321
| | [0.11s | 0.54MB] loaded patient 12749
| | [0.08s | 0.36MB] loaded patient 15903
| | [0.06s | 0.30MB] loaded patient 14079
| | [0.03s | 0.15MB] loaded patient 16533
| | [0.04s | 0.21MB] loaded patient 13689
| | [0.08s | 0.42MB] loaded patient 15516
| | [0.10s | 0.48MB] loaded patient 10259
| | [0.07s | 0.33MB] loaded patient 14305
| | [0.07s | 0.33MB] loaded patient 12900
| | [0.09s | 0.45MB] loaded patient 12821
| | [0.09s | 0.45MB] loaded patient 14156
| | [0.08s | 0.42MB] loaded patient 12911
| | [0.05s | 0.27MB] loaded patient 12947
| | [0.10s | 0.54MB] loaded patient 12894
| | [0.02s | 0.09MB] loaded patient 15512
| | [0.07s | 0.33MB] loaded patient 8864
| | [0.07s | 0.36MB] loaded patient 8984
| | [0.06s | 0.30MB] loaded patient 10276
| | [0.12s | 0.60MB] loaded patient 12954
| | [0.04s | 0.27MB] loaded patient 12868
| | [0.06s | 0.39MB] loaded patient 9255
| | [0.07s | 0.39MB] loaded patient 13022
| | [0.13s | 0.72MB] loaded patient 16550
| | [0.03s | 0.18MB] loaded patient 9228
| | [0.10s | 0.57MB] loaded patient 8956
| | [0.03s | 0.24MB] loaded patient 16014
| | [0.12s | 0.69MB] loaded patient 8975
| | [0.07s | 0.45MB] loaded patient 14191
| | [0.08s | 0.54MB] loaded patient 9382
| | [0.05s | 0.36MB] loaded patient 13591
| | [0.04s | 0.27MB] loaded patient 13024
| | [0.04s | 0.30MB] loaded patient 9256
| | [0.08s | 0.54MB] loaded patient 12895
| | [0.04s | 0.30MB] loaded patient 10295
| | [0.03s | 0.27MB] loaded patient 13402
| | [0.06s | 0.45MB] loaded patient 14157
| | [0.03s | 0.27MB] loaded patient 9081
| | [0.03s | 0.33MB] loaded patient 12908
| | [0.02s | 0.30MB] loaded patient 14190
| | [0.03s | 0.39MB] loaded patient 9345
| | [0.04s | 0.48MB] loaded patient 12890
| | [0.03s | 0.48MB] loaded patient 12750
| | [0.02s | 0.36MB] loaded patient 12826
| | [0.03s | 0.51MB] loaded patient 15472
| | [0.02s | 0.42MB] loaded patient 9226
| | Combining thread results...
| [6.08s | 83.64MB] 2788 images (1.0%) sampled from 254 patients
| Loading Images...
| | [0.45s | 4.53MB] loaded patient 16895
| | [0.51s | 5.13MB] loaded patient 8916
| | [0.55s | 4.56MB] loaded patient 16552
| | [0.63s | 6.54MB] loaded patient 9174
| | [0.78s | 8.43MB] loaded patient 12873
| | [0.96s | 10.68MB] loaded patient 8959
| | [1.00s | 11.04MB] loaded patient 12875
| | [1.36s | 14.91MB] loaded patient 13404
| | [1.47s | 17.94MB] loaded patient 9258
| | [1.51s | 18.36MB] loaded patient 12891
| | [1.57s | 19.74MB] loaded patient 9267
| | [1.60s | 20.07MB] loaded patient 13460
| | [1.85s | 25.02MB] loaded patient 9073
| | [2.05s | 29.25MB] loaded patient 8863
| | [2.08s | 29.64MB] loaded patient 12823
| | [2.09s | 30.06MB] loaded patient 14189
| | [2.12s | 31.26MB] loaded patient 9324
| | [2.12s | 31.50MB] loaded patient 12907
| | [2.24s | 33.81MB] loaded patient 16896
| | [2.27s | 34.68MB] loaded patient 10278
| | [2.44s | 40.83MB] loaded patient 9346
| | [2.49s | 42.48MB] loaded patient 10301
| | [2.56s | 43.77MB] loaded patient 9322
| | [2.91s | 55.98MB] loaded patient 16085
| | [2.99s | 60.78MB] loaded patient 10282
| | Combining thread results...
| [7.77s | 631.01MB] 21033 images (100.0%) sampled from 25 patients
| [32.43s | 0.00MB] Kernel SVM Computed
| Running test data:
| | Incorrect labels: 3831 (18.2%)
| | Correct labels: 17202 (81.8)%
| | False positive: 1466
| | False negative: 2365
| | True positive: 3001
| | True negative: 14201
| [233.48s] 21033 tests run
| Running test data:
| | Incorrect labels: 562 (20.2%)
| | Correct labels: 2226 (79.8)%
| | False positive: 181
| | False negative: 381
| | True positive: 481
| | True negative: 1745
| [30.89s] 2788 tests run
[310.67s] Program finished.
(sk) nid00010(373)$
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment