Compiling MOM6 on triton (linux cluster gcc4.4.7+openmpi1.8.5+netcdf4.3.0

compile_mom6.bash

#!/bin/bash

MOM6_installdir=#'where you cloned ESMG-configs'
MOM6_rundir=#'where you want to run the code (usually scratch)'

compile_fms=1
compile_mom=1
debug=0

#---------------------------------------------------------------
# nothing needs to be changed below this line
#---------------------------------------------------------------

# load netcdf and openmpi
module load netcdf/4.3.0-gcc4.4.7
module load openmpi/1.8.5_gcc4.4.7

mkdir -p $MOM6_rundir

cd $MOM6_rundir

# Create blank env file
rm -Rf $MOM6_rundir/build
mkdir -p build/gnu/shared/repro/
echo > build/gnu/env

# copy mkmf
mkdir -p build/mkmf
cp -r $MOM6_installdir/src/mkmf/bin $MOM6_rundir/build/mkmf/bin
cp -r $MOM6_installdir/src/mkmf/templates $MOM6_rundir/build/mkmf/templates

# compile FMS
if [ $compile_fms == 1 ] ; then

   cd $MOM6_rundir
   rm -Rf build/gnu/shared/repro/
   mkdir -p build/gnu/shared/repro/
   (cd build/gnu/shared/repro/; rm -f path_names; \
   $MOM6_rundir/build/mkmf/bin/list_paths $MOM6_installdir/src/FMS; \
   $MOM6_rundir/build/mkmf/bin/mkmf -t $MOM6_rundir/build/mkmf/templates/triton-gnu.mk -p libfms.a -c "-Duse_libMPI -Duse_netCDF -DSPMD" path_names)

   if [ $debug == 1 ] ; then
   (cd build/gnu/shared/repro/; source ../../env; make NETCDF=4 DEBUG=1 FC=mpif90 CC=mpicc libfms.a -j 6)
   else
   (cd build/gnu/shared/repro/; source ../../env; make NETCDF=4 REPRO=1 FC=mpif90 CC=mpicc libfms.a -j 6)
   fi

fi

# compile MOM6
if [ $compile_mom == 1 ] ; then

    cd $MOM6_rundir
    rm -Rf build/gnu/ice_ocean_SIS2/repro/
    mkdir -p build/gnu/ice_ocean_SIS2/repro/
    (cd build/gnu/ice_ocean_SIS2/repro/; rm -f path_names; \
    $MOM6_rundir/build/mkmf/bin/list_paths ./ $MOM6_installdir/src/MOM6/config_src/{dynamic,coupled_driver} $MOM6_installdir/src/MOM6/src/{*,*/*}/ $MOM6_installdir/src/{atmos_null,coupler,land_null,ice_ocean_extras,icebergs,SIS2,FMS/coupler,FMS/include}/)
    (cd build/gnu/ice_ocean_SIS2/repro/; \
   $MOM6_rundir/build/mkmf/bin/mkmf -t $MOM6_rundir/build/mkmf/templates/triton-gnu.mk -o '-I../../shared/repro' -p 'MOM6 -L../../shared/repro -lfms' -c '-Duse_libMPI -Duse_netCDF -DSPMD -DUSE_LOG_DIAG_FIELD_INFO' path_names )

    if [ $debug == 1 ] ; then
    (cd build/gnu/ice_ocean_SIS2/repro/; source ../../env; make NETCDF=4 DEBUG=1 MOM6 -j)
    else
    (cd build/gnu/ice_ocean_SIS2/repro/; source ../../env; make NETCDF=4 REPRO=1 MOM6 -j)
    fi

fi