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# $Id: vim-keys.conf,v 1.2 2010-09-18 09:36:15 nicm Exp $
#
# vim-keys.conf, v1.2 2010/09/12
#
# By Daniel Thau.  Public domain.
#
# This configuration file binds many vi- and vim-like bindings to the
# appropriate tmux key bindings.  Note that for many key bindings there is no
# tmux analogue.  This is intended for tmux 1.3, which handles pane selection
# differently from the previous versions

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blastp -db fasta.fa -query database.fa \
    -outfmt "6 std stitle qcovs" -num_threads 10 -out out.blast

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#!/bin/bash
TYPE=${TYPE:-prot}
[[ ! -z ${1} ]] && INFILE=${1} || exit 1
shift
makeblastdb -in ${INFILE} -dbtype ${TYPE} -parse_seqids ${@} -blastdb_version 5

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#!/usr/bin/env python

import pandas as pd
import click
from Bio.Seq import Seq
from Bio.SeqRecord import SeqRecord
from Bio import SeqIO


@click.command()

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# List unique values in a DataFrame column
pd.unique(df.column_name.ravel())

# Convert Series datatype to numeric, getting rid of any non-numeric values
df['col'] = df['col'].astype(str).convert_objects(convert_numeric=True)

# Grab DataFrame rows where column has certain values
valuelist = ['value1', 'value2', 'value3']
df = df[df.column.isin(valuelist)]