rayleigh

Code:

#!/usr/bin/perl

use strict;
use warnings;
use JSON::Any;

my %phenotype_to_genotype = ();
open KEY, "<", 'phenotype_to_genotype.txt';

rayleigh

Argument "" isn't numeric in addition (+) at /home/ray/cxgn/local-lib/lib/perl5/R/YapRI/Data/Matrix.pm line 1047. 

Argument "" isn't numeric in addition (+) at /home/ray/cxgn/local-lib/lib/perl5/R/YapRI/Data/Matrix.pm line 1128.

(I think the causes are using add row and add col on an empty matrix object.)

rayleigh

cpanm (App::cpanminus) 1.4007 on perl 5.010000 built for i486-linux-gnu-thread-multi
Work directory is /home/ray/.cpanm/work/1314821016.27655
You have make /usr/bin/make
You have LWP 6.02
You have /bin/tar: tar (GNU tar) 1.20
Copyright (C) 2008 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.

rayleigh

cpanm (App::cpanminus) 1.4007 on perl 5.010000 built for i486-linux-gnu-thread-multi
Work directory is /home/ray/.cpanm/work/1314815761.19246
You have make /usr/bin/make
You have LWP 6.02
You have /bin/tar: tar (GNU tar) 1.20
Copyright (C) 2008 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.

rayleigh

cpanm (App::cpanminus) 1.4007 on perl 5.010000 built for i486-linux-gnu-thread-multi
Work directory is /home/ray/.cpanm/work/1314814488.17153
You have make /usr/bin/make
You have LWP 6.02
You have /bin/tar: tar (GNU tar) 1.20
Copyright (C) 2008 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.

rayleigh

Use of uninitialized value $ENV{"REMOTE_USER"} in print at /home/ray/.cpanm/work
/1314812632.15569/Catalyst-Controller-WrapCGI-0.033/t/lib/TestApp/Controller/Root.pm line 66.

#   Failed test 'REMOTE_USER was passed'
#   at t/wrap-cgi.t line 65.
#          got: ''
#     expected: 'TEST_USER'
# Looks like you failed 1 test of 7.
t/wrap-cgi.t ........... 
Dubious, test returned 1 (wstat 256, 0x100)

rayleigh

<img_info>
<img_name>Flower</img_name>
<img_src>/tmp/flower/</img_src>
   <exp>
   <exp_name>Petal test</exp_name>
      <PO_term_info>
         <term>POxxxxx</PO_term>
         <color>0,0,224</color>
         <pixel>25,100</pixel> 
         #Because it uses fill, the program needs to know a pixel

rayleigh

The error message is:
Attribute (control_signal_for_tissue) does not pass the type constraint because: Validation failed for 'HashRef[Num]' with value %dif_in_control_sig at /home/ray/cxgn/sgn/lib//SGN/Feature/ExpressionViewer/Converter.pm line 145
	SGN::Feature::ExpressionViewer::Converter::calculate_comparison('SGN::Feature::ExpressionViewer::Converter=HASH(0x8bda4a0)', 'SGN::Feature::ExpressionViewer::Converter=HASH(0x8be3610)', 0, 0, 0, 0) called at /home/ray/cxgn/sgn/lib//SGN/Feature/ExpressionViewer/Analyzer.pm line 133
	SGN::Feature::ExpressionViewer::Analyzer::make_comparison_picture('SGN::Feature::ExpressionViewer::Analyzer=HASH(0x8be3540)', 0, 0, 0, 0) called at image_conversion.t line 419

And the code is:
   my ($self, $comparison_converter, $threshold,
                $override, $grey_mask_on, $mask_ratio) = @_;
   my %dif_in_gene_sig;
   my %dif_in_control_sig;

rayleigh

Can't use string ("SGN::Feature::ExpressionViewer::") as a HASH ref while "strict refs" in use at /home/ray/cxgn/sgn/lib//SGN/Feature/ExpressionViewer/Converter.pm (line 6) line 6.

rayleigh

cpanm (App::cpanminus) 1.4007 on perl 5.010000 built for i486-linux-gnu-thread-multi
Work directory is /home/ray/.cpanm/work/1306860632.12582
You have make /usr/bin/make
You have LWP 5.813
You have /bin/tar: tar (GNU tar) 1.20
Copyright (C) 2008 Free Software Foundation, Inc.
License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html>
This is free software: you are free to change and redistribute it.
There is NO WARRANTY, to the extent permitted by law.