Setup a MacBook for Data Science

ds_macup.sh

#!/usr/bin/env sh

# clean macOS setup after installing xcode via xcode-select --install

# install homebrew for package management
/bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/HEAD/install.sh)"

# make homebrew versions of packages take precedent over path binaries and create .zshrc
echo 'export PATH="/usr/local/bin:/usr/local/sbin:~bin:$PATH"' > .zshrc

# test correct installation of brew
brew doctor

# update index of packages available through homebrew
brew update

#install CLI tools: ex. gnu awk/sed, DS languages, pipenv, RDBs
brew install htop gsed gawk tmux git r python3 pipenv postgresql mysql mariadb julia mactex \
  libsvg curl libxml2 gdal geos boost

# install GUI applications via brew cask and x11
brew install --cask slack visual-studio-code docker miniconda rstudio google-chrome zotero xpra \
  zoom spotify cyberduck discord vnc-viewer wget xquartz java

# upgrade pip & python setup tools via pip
pip3 install --upgrade pip
pip3 install --upgrade setuptools

# pip install data science stack depends
pip3 install virtualenvwrapper
pip3 install cython
pip3 install nose

# manage the data science stack with pip, since scipy is incomplete via brew
pip3 install numpy scipy matplotlib ipython jupyter pandas sympy nose 

#install sklearn with remaining dependencies
pip3 install -U scikit-learn

#install pytorch 
pip3 install torch torchvision

#install tensorflow
pip3 install tensorflow

#install cookiecutter data science project management tool
pip3 install cookiecutter

#install new-py
pip3 install new-py

#install rust language
curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh

# enable autocomplete commands
echo "autoload bashcompinit && bashcompinit" >> .zshrc

To run this, download the shell script ds_macup.sh and then run chmod a+x ds_macup.sh to enable semi-automated install via ./ds_macup.sh. I didn't test as sudo, but sudo ./ds_macup.sh may be able to run without a password.

Added Julia and Rust lang installs

added line to append autoload bashcompinit && bashcompinit to .zshrc. need to close terminal or run source .zshrc to init

added wget install to version 9

Added pip3 install for cookiecutter