rbronste
rbronste
/ SummarizedExperiment_DiffBindcounts
Last active
January 22, 2019 01:30
Creating a Ranged Summarized Experiment object from DiffBind matrix output. R packages: DiffBind, BiocParallel
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| # Create a dba.count object | |
| library("BiocParallel") | |
| library("DiffBind") | |
| parallel=TRUE | |
| BPPARAM=MulticoreParam(4) | |
| ATAC_adult_BNST<- dba(sampleSheet = "Adult_ATAC_BNST1.csv", config=data.frame(AnalysisMethod=DBA_DESEQ2, fragmentSize = 0, th=.05),peakFormat="narrow") |