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| t/01app.t ...................................... ok | |
| t/02pod.t ...................................... skipped: set TEST_POD to enable this test | |
| t/03podcoverage.t .............................. skipped: set TEST_POD to enable this test | |
| t/Bio/SecreTary/tmpred.t ....................... ok | |
| t/CXGN/Bulk/unigene_converter.t ................ ok | |
| Issuing rollback() for database handle being DESTROY'd without explicit disconnect(). | |
| t/CXGN/Cview/Map/SGN/genetic.t ................. ok | |
| ITAG_devel_genomic.conf [main:database] not available | |
| t/CXGN/Cview/MapFactory/sgn.t .................. ok | |
| t/CXGN/Page/Form/forms.t ....................... ok | |
| t/DrawContigAlign/ContigAlign.t ................ ok | |
| t/DrawContigAlign/DepthData.t .................. ok | |
| t/DrawContigAlign/Pane.t ....................... ok | |
| t/DrawContigAlign/zzz_main.t ................... ok | |
| t/SGN/Controller/Clone/Genomic.t ............... ok | |
| t/SGN/Controller/Clone_Genomic.t ............... ok | |
| t/SGN/Controller/Download.t .................... ok | |
| t/SGN/Controller/JavaScript.t .................. ok | |
| t/SGN/Controller/Marker.t ...................... ok | |
| t/SGN/Controller/Organism.t .................... ok | |
| t/SGN/Controller/Project/Secretom.t ............ ok | |
| t/SGN/Controller/Project/Secretom/Secretary.t .. ok | |
| t/SGN/Controller/Root.t ........................ ok | |
| t/SGN/Exception.t .............................. ok | |
| t/SGN/Test.t ................................... ok | |
| # deleting 83 test data objects | |
| t/SGN/Test/Data.t .............................. ok | |
| # deleting 16 test data objects | |
| t/SGN/View/Feature.t ........................... ok | |
| t/SGN/genefamily.t ............................. ok | |
| t/context.t .................................... ok | |
| # Catalyst error screen: CGI invocation failed: No database found! at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/Map/SGN/Contig.pm line 93. | |
| # at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/Map/SGN/Contig.pm line 93 | |
| # CXGN::Cview::Map::SGN::Contig::get_chromosome('CXGN::Cview::Map::SGN::Contig=HASH(0x146bcfb0)', 12) called at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/Map/SGN/Contig.pm line 155 | |
| # CXGN::Cview::Map::SGN::Contig::get_overview_chromosome('CXGN::Cview::Map::SGN::Contig=HASH(0x146bcfb0)', 12) called at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/MapOverviews/Generic.pm line 121 | |
| # CXGN::Cview::MapOverviews::Generic::render('CXGN::Cview::MapOverviews::Generic=HASH(0x14680d20)') called at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/MapOverviews/Generic.pm line 230 | |
| # CXGN::Cview::MapOverviews::Generic::render_map('CXGN::Cview::MapOverviews::Generic=HASH(0x14680d20)') called at /crypt/rob/cxgn/git/sgn/mason/cview/map/overview.mas line 131 | |
| # HTML::Mason::Commands::__ANON__('dbh', 'CXGN::DB::Connection=HASH(0x144ad188)', 'map', 'CXGN::Cview::Map::SGN::Contig=HASH(0x146bcfb0)', 'size', undef, 'hilite_markers', 'ARRAY(0x143f9628)', 'map_items', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Component.pm line 135 | |
| # HTML::Mason::Component::run('HTML::Mason::Component::FileBased=HASH(0x1474db00)', 'dbh', 'CXGN::DB::Connection=HASH(0x144ad188)', 'map', 'CXGN::Cview::Map::SGN::Contig=HASH(0x146bcfb0)', 'size', undef, 'hilite_markers', 'ARRAY(0x143f9628)', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1302 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1292 | |
| # HTML::Mason::Request::comp(undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0x144ad188)', 'map', 'CXGN::Cview::Map::SGN::Contig=HASH(0x146bcfb0)', 'size', undef, 'hilite_markers', ...) called at /crypt/rob/cxgn/git/sgn/mason/cview/map/index.mas line 215 | |
| # HTML::Mason::Commands::__ANON__('dbh', 'CXGN::DB::Connection=HASH(0x144ad188)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', undef, 'physical', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Component.pm line 135 | |
| # HTML::Mason::Component::run('HTML::Mason::Component::FileBased=HASH(0x147042b0)', 'dbh', 'CXGN::DB::Connection=HASH(0x144ad188)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', undef, ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1302 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1292 | |
| # HTML::Mason::Request::comp(undef, undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0x144ad188)', 'map_version_id', undef, 'map_id', 'c9', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 955 | |
| # HTML::Mason::Request::call_next('HTML::Mason::Request=HASH(0x1471ba68)') called at /crypt/rob/cxgn/git/sgn/mason/autohandler line 3 | |
| # HTML::Mason::Commands::__ANON__('dbh', 'CXGN::DB::Connection=HASH(0x144ad188)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', undef, 'physical', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Component.pm line 135 | |
| # HTML::Mason::Component::run('HTML::Mason::Component::FileBased=HASH(0x1474ab48)', 'dbh', 'CXGN::DB::Connection=HASH(0x144ad188)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', undef, ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1302 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1292 | |
| # HTML::Mason::Request::comp(undef, undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0x144ad188)', 'map_version_id', undef, 'map_id', 'c9', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 483 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 483 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 433 | |
| # HTML::Mason::Request::exec('HTML::Mason::Request=HASH(0x1471ba68)') called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Interp.pm line 342 | |
| # HTML::Mason::Interp::exec(undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0x144ad188)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', ...) called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 67 | |
| # SGN::Role::Site::Mason::__ANON__() called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 121 | |
| # eval {...} called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 121 | |
| # SGN::Role::Site::Mason::_trap_mason_error('SGN=HASH(0x14720158)', 'CODE(0x14767ad0)') called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 67 | |
| # SGN::Role::Site::Mason::forward_to_mason_view('SGN=HASH(0x14720158)', '/cview/map/index.mas', 'dbh', 'CXGN::DB::Connection=HASH(0x144ad188)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', ...) called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 27 | |
| # eval {...} called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 2 | |
| # | |
| # Stack: | |
| # [/crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm:1345] | |
| # [/crypt/rob/cxgn/git/sgn/mason/cview/map/index.mas:215] | |
| # [/crypt/rob/cxgn/git/sgn/mason/autohandler:3] | |
| # at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 128 | |
| # SGN::Role::Site::Mason::_trap_mason_error('SGN=HASH(0x14720158)', 'CODE(0x14767ad0)') called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 67 | |
| # SGN::Role::Site::Mason::forward_to_mason_view('SGN=HASH(0x14720158)', '/cview/map/index.mas', 'dbh', 'CXGN::DB::Connection=HASH(0x144ad188)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', ...) called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 27 | |
| # eval {...} called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 2 | |
| # at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 92 | |
| # Failed test 'Followed link with "text=Tomato FPC contig map"' | |
| # at t/cview/map.t line 20. | |
| # 500 | |
| # Internal Server Error | |
| # Failed test 'Content contains "Map statistics"' | |
| # at t/cview/map.t line 23. | |
| # searched: "" | |
| # can't find: "Map statistics" | |
| # LCSS: "" | |
| # LCSS context: "" | |
| # Catalyst error screen: CGI invocation failed: Can't find file ... at /crypt/rob/cxgn/git/sgn/bin/../lib/CXGN/Cview/Chromosome/ITAG.pm line 78. | |
| # at /crypt/rob/cxgn/git/sgn/bin/../lib/CXGN/Cview/Chromosome/ITAG.pm line 78 | |
| # CXGN::Cview::Chromosome::ITAG::new('CXGN::Cview::Chromosome::ITAG', 12, 100, 10, 10, undef, 'CXGN::DB::Connection=HASH(0x158e9280)', 'Path::Class::Dir=HASH(0x14e73b10)') called at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/Map/SGN/ITAG.pm line 62 | |
| # CXGN::Cview::Map::SGN::ITAG::get_chromosome('CXGN::Cview::Map::SGN::ITAG=HASH(0x14e00b48)', 12) called at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/Map/SGN/ITAG.pm line 89 | |
| # CXGN::Cview::Map::SGN::ITAG::get_overview_chromosome('CXGN::Cview::Map::SGN::ITAG=HASH(0x14e00b48)', 12) called at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/MapOverviews/Generic.pm line 121 | |
| # CXGN::Cview::MapOverviews::Generic::render('CXGN::Cview::MapOverviews::Generic=HASH(0x14e771f0)') called at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/MapOverviews/Generic.pm line 230 | |
| # CXGN::Cview::MapOverviews::Generic::render_map('CXGN::Cview::MapOverviews::Generic=HASH(0x14e771f0)') called at /crypt/rob/cxgn/git/sgn/mason/cview/map/overview.mas line 131 | |
| # HTML::Mason::Commands::__ANON__('dbh', 'CXGN::DB::Connection=HASH(0x158e9280)', 'map', 'CXGN::Cview::Map::SGN::ITAG=HASH(0x14e00b48)', 'size', undef, 'hilite_markers', 'ARRAY(0x144ad158)', 'map_items', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Component.pm line 135 | |
| # HTML::Mason::Component::run('HTML::Mason::Component::FileBased=HASH(0x14e70638)', 'dbh', 'CXGN::DB::Connection=HASH(0x158e9280)', 'map', 'CXGN::Cview::Map::SGN::ITAG=HASH(0x14e00b48)', 'size', undef, 'hilite_markers', 'ARRAY(0x144ad158)', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1302 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1292 | |
| # HTML::Mason::Request::comp(undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0x158e9280)', 'map', 'CXGN::Cview::Map::SGN::ITAG=HASH(0x14e00b48)', 'size', undef, 'hilite_markers', ...) called at /crypt/rob/cxgn/git/sgn/mason/cview/map/index.mas line 215 | |
| # HTML::Mason::Commands::__ANON__('dbh', 'CXGN::DB::Connection=HASH(0x158e9280)', 'map_version_id', undef, 'map_id', 'itag', 'hilite', undef, 'physical', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Component.pm line 135 | |
| # HTML::Mason::Component::run('HTML::Mason::Component::FileBased=HASH(0x14e7d468)', 'dbh', 'CXGN::DB::Connection=HASH(0x158e9280)', 'map_version_id', undef, 'map_id', 'itag', 'hilite', undef, ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1302 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1292 | |
| # HTML::Mason::Request::comp(undef, undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0x158e9280)', 'map_version_id', undef, 'map_id', 'itag', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 955 | |
| # HTML::Mason::Request::call_next('HTML::Mason::Request=HASH(0x158f00d8)') called at /crypt/rob/cxgn/git/sgn/mason/autohandler line 3 | |
| # HTML::Mason::Commands::__ANON__('dbh', 'CXGN::DB::Connection=HASH(0x158e9280)', 'map_version_id', undef, 'map_id', 'itag', 'hilite', undef, 'physical', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Component.pm line 135 | |
| # HTML::Mason::Component::run('HTML::Mason::Component::FileBased=HASH(0x14e7d448)', 'dbh', 'CXGN::DB::Connection=HASH(0x158e9280)', 'map_version_id', undef, 'map_id', 'itag', 'hilite', undef, ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1302 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1292 | |
| # HTML::Mason::Request::comp(undef, undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0x158e9280)', 'map_version_id', undef, 'map_id', 'itag', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 483 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 483 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 433 | |
| # HTML::Mason::Request::exec('HTML::Mason::Request=HASH(0x158f00d8)') called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Interp.pm line 342 | |
| # HTML::Mason::Interp::exec(undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0x158e9280)', 'map_version_id', undef, 'map_id', 'itag', 'hilite', ...) called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 67 | |
| # SGN::Role::Site::Mason::__ANON__() called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 121 | |
| # eval {...} called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 121 | |
| # SGN::Role::Site::Mason::_trap_mason_error('SGN=HASH(0x14737118)', 'CODE(0x158e89f0)') called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 67 | |
| # SGN::Role::Site::Mason::forward_to_mason_view('SGN=HASH(0x14737118)', '/cview/map/index.mas', 'dbh', 'CXGN::DB::Connection=HASH(0x158e9280)', 'map_version_id', undef, 'map_id', 'itag', 'hilite', ...) called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 27 | |
| # eval {...} called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 2 | |
| # | |
| # Stack: | |
| # [/crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm:1345] | |
| # [/crypt/rob/cxgn/git/sgn/mason/cview/map/index.mas:215] | |
| # [/crypt/rob/cxgn/git/sgn/mason/autohandler:3] | |
| # at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 128 | |
| # SGN::Role::Site::Mason::_trap_mason_error('SGN=HASH(0x14737118)', 'CODE(0x158e89f0)') called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 67 | |
| # SGN::Role::Site::Mason::forward_to_mason_view('SGN=HASH(0x14737118)', '/cview/map/index.mas', 'dbh', 'CXGN::DB::Connection=HASH(0x158e9280)', 'map_version_id', undef, 'map_id', 'itag', 'hilite', ...) called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 27 | |
| # eval {...} called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 2 | |
| # at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 92 | |
| # Failed test 'Followed link with "text=Tomato ITAG map"' | |
| # at t/cview/map.t line 20. | |
| # 500 | |
| # Internal Server Error | |
| # Failed test 'Content contains "Map statistics"' | |
| # at t/cview/map.t line 23. | |
| # searched: "" | |
| # can't find: "Map statistics" | |
| # LCSS: "" | |
| # LCSS context: "" | |
| # Catalyst error screen: CGI invocation failed: No database found! at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/Map/SGN/Contig.pm line 93. | |
| # at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/Map/SGN/Contig.pm line 93 | |
| # CXGN::Cview::Map::SGN::Contig::get_chromosome('CXGN::Cview::Map::SGN::Contig=HASH(0x163df560)', 12) called at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/Map/SGN/Contig.pm line 155 | |
| # CXGN::Cview::Map::SGN::Contig::get_overview_chromosome('CXGN::Cview::Map::SGN::Contig=HASH(0x163df560)', 12) called at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/MapOverviews/Generic.pm line 121 | |
| # CXGN::Cview::MapOverviews::Generic::render('CXGN::Cview::MapOverviews::Generic=HASH(0x163deeb0)') called at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/MapOverviews/Generic.pm line 230 | |
| # CXGN::Cview::MapOverviews::Generic::render_map('CXGN::Cview::MapOverviews::Generic=HASH(0x163deeb0)') called at /crypt/rob/cxgn/git/sgn/mason/cview/map/overview.mas line 131 | |
| # HTML::Mason::Commands::__ANON__('dbh', 'CXGN::DB::Connection=HASH(0x16a468d8)', 'map', 'CXGN::Cview::Map::SGN::Contig=HASH(0x163df560)', 'size', undef, 'hilite_markers', 'ARRAY(0x16ac10b8)', 'map_items', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Component.pm line 135 | |
| # HTML::Mason::Component::run('HTML::Mason::Component::FileBased=HASH(0x163e6588)', 'dbh', 'CXGN::DB::Connection=HASH(0x16a468d8)', 'map', 'CXGN::Cview::Map::SGN::Contig=HASH(0x163df560)', 'size', undef, 'hilite_markers', 'ARRAY(0x16ac10b8)', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1302 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1292 | |
| # HTML::Mason::Request::comp(undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0x16a468d8)', 'map', 'CXGN::Cview::Map::SGN::Contig=HASH(0x163df560)', 'size', undef, 'hilite_markers', ...) called at /crypt/rob/cxgn/git/sgn/mason/cview/map/index.mas line 215 | |
| # HTML::Mason::Commands::__ANON__('dbh', 'CXGN::DB::Connection=HASH(0x16a468d8)', 'map_version_id', 'c9', 'map_id', undef, 'hilite', undef, 'physical', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Component.pm line 135 | |
| # HTML::Mason::Component::run('HTML::Mason::Component::FileBased=HASH(0x15f135a8)', 'dbh', 'CXGN::DB::Connection=HASH(0x16a468d8)', 'map_version_id', 'c9', 'map_id', undef, 'hilite', undef, ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1302 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1292 | |
| # HTML::Mason::Request::comp(undef, undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0x16a468d8)', 'map_version_id', 'c9', 'map_id', undef, ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 955 | |
| # HTML::Mason::Request::call_next('HTML::Mason::Request=HASH(0x15ee29c8)') called at /crypt/rob/cxgn/git/sgn/mason/autohandler line 3 | |
| # HTML::Mason::Commands::__ANON__('dbh', 'CXGN::DB::Connection=HASH(0x16a468d8)', 'map_version_id', 'c9', 'map_id', undef, 'hilite', undef, 'physical', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Component.pm line 135 | |
| # HTML::Mason::Component::run('HTML::Mason::Component::FileBased=HASH(0x1638b900)', 'dbh', 'CXGN::DB::Connection=HASH(0x16a468d8)', 'map_version_id', 'c9', 'map_id', undef, 'hilite', undef, ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1302 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1292 | |
| # HTML::Mason::Request::comp(undef, undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0x16a468d8)', 'map_version_id', 'c9', 'map_id', undef, ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 483 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 483 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 433 | |
| # HTML::Mason::Request::exec('HTML::Mason::Request=HASH(0x15ee29c8)') called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Interp.pm line 342 | |
| # HTML::Mason::Interp::exec(undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0x16a468d8)', 'map_version_id', 'c9', 'map_id', undef, 'hilite', ...) called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 67 | |
| # SGN::Role::Site::Mason::__ANON__() called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 121 | |
| # eval {...} called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 121 | |
| # SGN::Role::Site::Mason::_trap_mason_error('SGN=HASH(0x1685a4d8)', 'CODE(0x16a46048)') called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 67 | |
| # SGN::Role::Site::Mason::forward_to_mason_view('SGN=HASH(0x1685a4d8)', '/cview/map/index.mas', 'dbh', 'CXGN::DB::Connection=HASH(0x16a468d8)', 'map_version_id', 'c9', 'map_id', undef, 'hilite', ...) called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 27 | |
| # eval {...} called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 2 | |
| # | |
| # Stack: | |
| # [/crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm:1345] | |
| # [/crypt/rob/cxgn/git/sgn/mason/cview/map/index.mas:215] | |
| # [/crypt/rob/cxgn/git/sgn/mason/autohandler:3] | |
| # at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 128 | |
| # SGN::Role::Site::Mason::_trap_mason_error('SGN=HASH(0x1685a4d8)', 'CODE(0x16a46048)') called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 67 | |
| # SGN::Role::Site::Mason::forward_to_mason_view('SGN=HASH(0x1685a4d8)', '/cview/map/index.mas', 'dbh', 'CXGN::DB::Connection=HASH(0x16a468d8)', 'map_version_id', 'c9', 'map_id', undef, 'hilite', ...) called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 27 | |
| # eval {...} called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 2 | |
| # at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 92 | |
| # Failed test 'Followed link with "text=Tomato FPC (SGN 2009)"' | |
| # at t/cview/map.t line 20. | |
| # 500 | |
| # Internal Server Error | |
| # Failed test 'Content contains "Map statistics"' | |
| # at t/cview/map.t line 23. | |
| # searched: "" | |
| # can't find: "Map statistics" | |
| # LCSS: "" | |
| # LCSS context: "" | |
| # Catalyst error screen: CGI invocation failed: Can't find file ... at /crypt/rob/cxgn/git/sgn/bin/../lib/CXGN/Cview/Chromosome/ITAG.pm line 78. | |
| # at /crypt/rob/cxgn/git/sgn/bin/../lib/CXGN/Cview/Chromosome/ITAG.pm line 78 | |
| # CXGN::Cview::Chromosome::ITAG::new('CXGN::Cview::Chromosome::ITAG', 12, 100, 10, 10, undef, 'CXGN::DB::Connection=HASH(0x16b7f130)', 'Path::Class::Dir=HASH(0x16845f90)') called at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/Map/SGN/ITAG.pm line 62 | |
| # CXGN::Cview::Map::SGN::ITAG::get_chromosome('CXGN::Cview::Map::SGN::ITAG=HASH(0x16b550d0)', 12) called at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/Map/SGN/ITAG.pm line 89 | |
| # CXGN::Cview::Map::SGN::ITAG::get_overview_chromosome('CXGN::Cview::Map::SGN::ITAG=HASH(0x16b550d0)', 12) called at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/MapOverviews/Generic.pm line 121 | |
| # CXGN::Cview::MapOverviews::Generic::render('CXGN::Cview::MapOverviews::Generic=HASH(0x16847698)') called at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/MapOverviews/Generic.pm line 230 | |
| # CXGN::Cview::MapOverviews::Generic::render_map('CXGN::Cview::MapOverviews::Generic=HASH(0x16847698)') called at /crypt/rob/cxgn/git/sgn/mason/cview/map/overview.mas line 131 | |
| # HTML::Mason::Commands::__ANON__('dbh', 'CXGN::DB::Connection=HASH(0x16b7f130)', 'map', 'CXGN::Cview::Map::SGN::ITAG=HASH(0x16b550d0)', 'size', undef, 'hilite_markers', 'ARRAY(0x16b1bc28)', 'map_items', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Component.pm line 135 | |
| # HTML::Mason::Component::run('HTML::Mason::Component::FileBased=HASH(0x16c06cf8)', 'dbh', 'CXGN::DB::Connection=HASH(0x16b7f130)', 'map', 'CXGN::Cview::Map::SGN::ITAG=HASH(0x16b550d0)', 'size', undef, 'hilite_markers', 'ARRAY(0x16b1bc28)', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1302 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1292 | |
| # HTML::Mason::Request::comp(undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0x16b7f130)', 'map', 'CXGN::Cview::Map::SGN::ITAG=HASH(0x16b550d0)', 'size', undef, 'hilite_markers', ...) called at /crypt/rob/cxgn/git/sgn/mason/cview/map/index.mas line 215 | |
| # HTML::Mason::Commands::__ANON__('dbh', 'CXGN::DB::Connection=HASH(0x16b7f130)', 'map_version_id', undef, 'map_id', 'itag', 'hilite', undef, 'physical', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Component.pm line 135 | |
| # HTML::Mason::Component::run('HTML::Mason::Component::FileBased=HASH(0x16b54730)', 'dbh', 'CXGN::DB::Connection=HASH(0x16b7f130)', 'map_version_id', undef, 'map_id', 'itag', 'hilite', undef, ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1302 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1292 | |
| # HTML::Mason::Request::comp(undef, undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0x16b7f130)', 'map_version_id', undef, 'map_id', 'itag', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 955 | |
| # HTML::Mason::Request::call_next('HTML::Mason::Request=HASH(0x16b816c8)') called at /crypt/rob/cxgn/git/sgn/mason/autohandler line 3 | |
| # HTML::Mason::Commands::__ANON__('dbh', 'CXGN::DB::Connection=HASH(0x16b7f130)', 'map_version_id', undef, 'map_id', 'itag', 'hilite', undef, 'physical', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Component.pm line 135 | |
| # HTML::Mason::Component::run('HTML::Mason::Component::FileBased=HASH(0x16b54710)', 'dbh', 'CXGN::DB::Connection=HASH(0x16b7f130)', 'map_version_id', undef, 'map_id', 'itag', 'hilite', undef, ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1302 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1292 | |
| # HTML::Mason::Request::comp(undef, undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0x16b7f130)', 'map_version_id', undef, 'map_id', 'itag', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 483 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 483 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 433 | |
| # HTML::Mason::Request::exec('HTML::Mason::Request=HASH(0x16b816c8)') called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Interp.pm line 342 | |
| # HTML::Mason::Interp::exec(undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0x16b7f130)', 'map_version_id', undef, 'map_id', 'itag', 'hilite', ...) called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 67 | |
| # SGN::Role::Site::Mason::__ANON__() called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 121 | |
| # eval {...} called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 121 | |
| # SGN::Role::Site::Mason::_trap_mason_error('SGN=HASH(0x16b05310)', 'CODE(0x16b7e8a0)') called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 67 | |
| # SGN::Role::Site::Mason::forward_to_mason_view('SGN=HASH(0x16b05310)', '/cview/map/index.mas', 'dbh', 'CXGN::DB::Connection=HASH(0x16b7f130)', 'map_version_id', undef, 'map_id', 'itag', 'hilite', ...) called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 27 | |
| # eval {...} called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 2 | |
| # | |
| # Stack: | |
| # [/crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm:1345] | |
| # [/crypt/rob/cxgn/git/sgn/mason/cview/map/index.mas:215] | |
| # [/crypt/rob/cxgn/git/sgn/mason/autohandler:3] | |
| # at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 128 | |
| # SGN::Role::Site::Mason::_trap_mason_error('SGN=HASH(0x16b05310)', 'CODE(0x16b7e8a0)') called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 67 | |
| # SGN::Role::Site::Mason::forward_to_mason_view('SGN=HASH(0x16b05310)', '/cview/map/index.mas', 'dbh', 'CXGN::DB::Connection=HASH(0x16b7f130)', 'map_version_id', undef, 'map_id', 'itag', 'hilite', ...) called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 27 | |
| # eval {...} called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 2 | |
| # at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 92 | |
| # Failed test 'Followed link with "text=Tomato ITAG map"' | |
| # at t/cview/map.t line 20. | |
| # 500 | |
| # Internal Server Error | |
| # Failed test 'Content contains "Map statistics"' | |
| # at t/cview/map.t line 23. | |
| # searched: "" | |
| # can't find: "Map statistics" | |
| # LCSS: "" | |
| # LCSS context: "" | |
| # Looks like you failed 8 tests of 76. | |
| t/cview/map.t .................................. | |
| Dubious, test returned 8 (wstat 2048, 0x800) | |
| Failed 8/76 subtests | |
| t/features/gbrowse2/data_sources.t ............. ok | |
| tomato_bacs.conf [main:database] not available | |
| ITAG_devel_protein.conf [main:database] not available | |
| ITAG1_protein.conf [main:database] not available | |
| ITAG_devel_genomic.conf [main:database] not available | |
| t/features/gbrowse2/xref.t ..................... ok | |
| t/image/ajax.t ................................. ok | |
| t/integration/ajax.t ........................... ok | |
| # Catalyst error screen: feature with name = 'JUNK' not found | |
| # Failed test 'GET /api/v1/sequence/JUNK.fasta' | |
| # at t/integration/api/sequence.t line 53. | |
| # 500 | |
| # Internal Server Error | |
| # Failed test 'Content contains "feature with name = 'JUNK' not found"' | |
| # at t/integration/api/sequence.t line 54. | |
| # searched: "" | |
| # can't find: "feature with name = 'JUNK' not found" | |
| # LCSS: "" | |
| # LCSS context: "" | |
| # deleting 16 test data objects | |
| # Looks like you failed 2 tests of 12. | |
| t/integration/api/sequence.t ................... | |
| Dubious, test returned 2 (wstat 512, 0x200) | |
| Failed 2/12 subtests | |
| t/integration/biosource.t ...................... ok | |
| t/integration/bulk.t ........................... ok | |
| # deleting 16 test data objects | |
| t/integration/feature.t ........................ ok | |
| # deleting 16 test data objects | |
| t/integration/feature_gene.t ................... ok | |
| # Catalyst error screen: feature with name = 'JUNK' not found | |
| # Failed test 'GET /feature/view/name/JUNK' | |
| # at t/integration/feature_invalid.t line 24. | |
| # 500 | |
| # Internal Server Error | |
| # Failed test 'Content contains "feature with name = 'JUNK' not found"' | |
| # at t/integration/feature_invalid.t line 25. | |
| # searched: "" | |
| # can't find: "feature with name = 'JUNK' not found" | |
| # LCSS: "" | |
| # LCSS context: "" | |
| # Catalyst error screen: feature with feature_id = '-1' not found | |
| # Failed test 'GET /feature/view/id/-1' | |
| # at t/integration/feature_invalid.t line 27. | |
| # 500 | |
| # Internal Server Error | |
| # Failed test 'Content contains "feature with feature_id = '-1' not found"' | |
| # at t/integration/feature_invalid.t line 28. | |
| # searched: "" | |
| # can't find: "feature with feature_id = '-1' not found" | |
| # LCSS: "" | |
| # LCSS context: "" | |
| # Catalyst error screen: JUNK is not a valid value for feature_id | |
| # Failed test 'GET /feature/view/id/JUNK' | |
| # at t/integration/feature_invalid.t line 30. | |
| # 500 | |
| # Internal Server Error | |
| # Failed test 'Content contains "JUNK is not a valid value for feature_id"' | |
| # at t/integration/feature_invalid.t line 31. | |
| # searched: "" | |
| # can't find: "JUNK is not a valid value for feature_id" | |
| # LCSS: "" | |
| # LCSS context: "" | |
| # Looks like you failed 6 tests of 6. | |
| t/integration/feature_invalid.t ................ | |
| Dubious, test returned 6 (wstat 1536, 0x600) | |
| Failed 6/6 subtests | |
| t/integration/feature_search.t ................. ok | |
| t/integration/gem.t ............................ ok | |
| t/integration/homepage.t ....................... ok | |
| t/integration/insilicopcr/index.t .............. ok | |
| t/integration/locus_display.t .................. ok | |
| t/integration/phenome.t ........................ ok | |
| t/integration/sequencing/itag/status.t ......... ok | |
| t/integration/solpeople.t ...................... ok | |
| t/integration/solpeople/blastwatch.t ........... ok | |
| t/integration/solpeople/login.t ................ ok | |
| t/integration/solpeople/new-account.t .......... ok | |
| t/integration/solpeople/sequencer.t ............ ok | |
| t/integration/tools/align_viewer.t ............. ok | |
| t/integration/tools/blast.t .................... ok | |
| t/integration/tools/caps_designer.t ............ ok | |
| Issuing rollback() for database handle being DESTROY'd without explicit disconnect(). | |
| t/integration/tools/genefamily/search.t ........ ok | |
| t/integration/tools/intron_finder.t ............ ok | |
| t/integration/tools/sigpep_find.t .............. ok | |
| t/maps/physical/clone_async.t .................. ok | |
| t/mason/sequence/highlighted.t ................. ok | |
| t/mason/util/markup_string.t ................... ok | |
| t/phenome/generic_gene_page.t .................. ok | |
| t/phenome/locus_display.t ...................... ok | |
| t/phenome/qtl.t ................................ ok | |
| t/solcyc_live.t ................................ skipped: set TEST_SOLCYC_LIVE=1 to test the solcyc live site | |
| t/system_message.t ............................. ok | |
| t/tools/intronfinder.t ......................... ok | |
| t/validate/align_viewer.t ...................... ok | |
| t/validate/biosource.t ......................... ok | |
| # Catalyst error screen: CGI invocation failed: No database found! at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/Map/SGN/Contig.pm line 93. | |
| # at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/Map/SGN/Contig.pm line 93 | |
| # CXGN::Cview::Map::SGN::Contig::get_chromosome('CXGN::Cview::Map::SGN::Contig=HASH(0xb5088dd8)', 12) called at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/Map/SGN/Contig.pm line 155 | |
| # CXGN::Cview::Map::SGN::Contig::get_overview_chromosome('CXGN::Cview::Map::SGN::Contig=HASH(0xb5088dd8)', 12) called at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/MapOverviews/Generic.pm line 121 | |
| # CXGN::Cview::MapOverviews::Generic::render('CXGN::Cview::MapOverviews::Generic=HASH(0x1e521da8)') called at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/MapOverviews/Generic.pm line 230 | |
| # CXGN::Cview::MapOverviews::Generic::render_map('CXGN::Cview::MapOverviews::Generic=HASH(0x1e521da8)') called at /crypt/rob/cxgn/git/sgn/mason/cview/map/overview.mas line 131 | |
| # HTML::Mason::Commands::__ANON__('dbh', 'CXGN::DB::Connection=HASH(0xb5082648)', 'map', 'CXGN::Cview::Map::SGN::Contig=HASH(0xb5088dd8)', 'size', undef, 'hilite_markers', 'ARRAY(0x1e530a70)', 'map_items', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Component.pm line 135 | |
| # HTML::Mason::Component::run('HTML::Mason::Component::FileBased=HASH(0x1e4e7aa8)', 'dbh', 'CXGN::DB::Connection=HASH(0xb5082648)', 'map', 'CXGN::Cview::Map::SGN::Contig=HASH(0xb5088dd8)', 'size', undef, 'hilite_markers', 'ARRAY(0x1e530a70)', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1302 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1292 | |
| # HTML::Mason::Request::comp(undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0xb5082648)', 'map', 'CXGN::Cview::Map::SGN::Contig=HASH(0xb5088dd8)', 'size', undef, 'hilite_markers', ...) called at /crypt/rob/cxgn/git/sgn/mason/cview/map/index.mas line 215 | |
| # HTML::Mason::Commands::__ANON__('dbh', 'CXGN::DB::Connection=HASH(0xb5082648)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', undef, 'physical', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Component.pm line 135 | |
| # HTML::Mason::Component::run('HTML::Mason::Component::FileBased=HASH(0x1e52efc0)', 'dbh', 'CXGN::DB::Connection=HASH(0xb5082648)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', undef, ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1302 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1292 | |
| # HTML::Mason::Request::comp(undef, undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0xb5082648)', 'map_version_id', undef, 'map_id', 'c9', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 955 | |
| # HTML::Mason::Request::call_next('HTML::Mason::Request=HASH(0x1e521e78)') called at /crypt/rob/cxgn/git/sgn/mason/autohandler line 3 | |
| # HTML::Mason::Commands::__ANON__('dbh', 'CXGN::DB::Connection=HASH(0xb5082648)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', undef, 'physical', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Component.pm line 135 | |
| # HTML::Mason::Component::run('HTML::Mason::Component::FileBased=HASH(0x1e530248)', 'dbh', 'CXGN::DB::Connection=HASH(0xb5082648)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', undef, ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1302 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1292 | |
| # HTML::Mason::Request::comp(undef, undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0xb5082648)', 'map_version_id', undef, 'map_id', 'c9', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 483 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 483 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 433 | |
| # HTML::Mason::Request::exec('HTML::Mason::Request=HASH(0x1e521e78)') called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Interp.pm line 342 | |
| # HTML::Mason::Interp::exec(undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0xb5082648)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', ...) called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 67 | |
| # SGN::Role::Site::Mason::__ANON__() called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 121 | |
| # eval {...} called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 121 | |
| # SGN::Role::Site::Mason::_trap_mason_error('SGN=HASH(0x1e528860)', 'CODE(0x1e52d6e8)') called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 67 | |
| # SGN::Role::Site::Mason::forward_to_mason_view('SGN=HASH(0x1e528860)', '/cview/map/index.mas', 'dbh', 'CXGN::DB::Connection=HASH(0xb5082648)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', ...) called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 27 | |
| # eval {...} called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 2 | |
| # | |
| # Stack: | |
| # [/crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm:1345] | |
| # [/crypt/rob/cxgn/git/sgn/mason/cview/map/index.mas:215] | |
| # [/crypt/rob/cxgn/git/sgn/mason/autohandler:3] | |
| # at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 128 | |
| # SGN::Role::Site::Mason::_trap_mason_error('SGN=HASH(0x1e528860)', 'CODE(0x1e52d6e8)') called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 67 | |
| # SGN::Role::Site::Mason::forward_to_mason_view('SGN=HASH(0x1e528860)', '/cview/map/index.mas', 'dbh', 'CXGN::DB::Connection=HASH(0xb5082648)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', ...) called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 27 | |
| # eval {...} called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 2 | |
| # at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 92 | |
| # Catalyst error screen: CGI invocation failed: No database found! at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/Map/SGN/Contig.pm line 93. | |
| # at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/Map/SGN/Contig.pm line 93 | |
| # CXGN::Cview::Map::SGN::Contig::get_chromosome('CXGN::Cview::Map::SGN::Contig=HASH(0x1d353f40)', 12) called at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/Map/SGN/Contig.pm line 155 | |
| # CXGN::Cview::Map::SGN::Contig::get_overview_chromosome('CXGN::Cview::Map::SGN::Contig=HASH(0x1d353f40)', 12) called at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/MapOverviews/Generic.pm line 121 | |
| # CXGN::Cview::MapOverviews::Generic::render('CXGN::Cview::MapOverviews::Generic=HASH(0x1e5787e0)') called at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/MapOverviews/Generic.pm line 230 | |
| # CXGN::Cview::MapOverviews::Generic::render_map('CXGN::Cview::MapOverviews::Generic=HASH(0x1e5787e0)') called at /crypt/rob/cxgn/git/sgn/mason/cview/map/overview.mas line 131 | |
| # HTML::Mason::Commands::__ANON__('dbh', 'CXGN::DB::Connection=HASH(0x1e5749b0)', 'map', 'CXGN::Cview::Map::SGN::Contig=HASH(0x1d353f40)', 'size', undef, 'hilite_markers', 'ARRAY(0x1d34fa10)', 'map_items', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Component.pm line 135 | |
| # HTML::Mason::Component::run('HTML::Mason::Component::FileBased=HASH(0x1e578c20)', 'dbh', 'CXGN::DB::Connection=HASH(0x1e5749b0)', 'map', 'CXGN::Cview::Map::SGN::Contig=HASH(0x1d353f40)', 'size', undef, 'hilite_markers', 'ARRAY(0x1d34fa10)', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1302 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1292 | |
| # HTML::Mason::Request::comp(undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0x1e5749b0)', 'map', 'CXGN::Cview::Map::SGN::Contig=HASH(0x1d353f40)', 'size', undef, 'hilite_markers', ...) called at /crypt/rob/cxgn/git/sgn/mason/cview/map/index.mas line 215 | |
| # HTML::Mason::Commands::__ANON__('dbh', 'CXGN::DB::Connection=HASH(0x1e5749b0)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', undef, 'physical', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Component.pm line 135 | |
| # HTML::Mason::Component::run('HTML::Mason::Component::FileBased=HASH(0x1e5777f8)', 'dbh', 'CXGN::DB::Connection=HASH(0x1e5749b0)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', undef, ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1302 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1292 | |
| # HTML::Mason::Request::comp(undef, undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0x1e5749b0)', 'map_version_id', undef, 'map_id', 'c9', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 955 | |
| # HTML::Mason::Request::call_next('HTML::Mason::Request=HASH(0x1e577458)') called at /crypt/rob/cxgn/git/sgn/mason/autohandler line 3 | |
| # HTML::Mason::Commands::__ANON__('dbh', 'CXGN::DB::Connection=HASH(0x1e5749b0)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', undef, 'physical', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Component.pm line 135 | |
| # HTML::Mason::Component::run('HTML::Mason::Component::FileBased=HASH(0x1d3554c0)', 'dbh', 'CXGN::DB::Connection=HASH(0x1e5749b0)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', undef, ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1302 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1292 | |
| # HTML::Mason::Request::comp(undef, undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0x1e5749b0)', 'map_version_id', undef, 'map_id', 'c9', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 483 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 483 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 433 | |
| # HTML::Mason::Request::exec('HTML::Mason::Request=HASH(0x1e577458)') called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Interp.pm line 342 | |
| # HTML::Mason::Interp::exec(undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0x1e5749b0)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', ...) called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 67 | |
| # SGN::Role::Site::Mason::__ANON__() called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 121 | |
| # eval {...} called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 121 | |
| # SGN::Role::Site::Mason::_trap_mason_error('SGN=HASH(0x183e9870)', 'CODE(0x1d354760)') called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 67 | |
| # SGN::Role::Site::Mason::forward_to_mason_view('SGN=HASH(0x183e9870)', '/cview/map/index.mas', 'dbh', 'CXGN::DB::Connection=HASH(0x1e5749b0)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', ...) called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 27 | |
| # eval {...} called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 2 | |
| # | |
| # Stack: | |
| # [/crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm:1345] | |
| # [/crypt/rob/cxgn/git/sgn/mason/cview/map/index.mas:215] | |
| # [/crypt/rob/cxgn/git/sgn/mason/autohandler:3] | |
| # at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 128 | |
| # SGN::Role::Site::Mason::_trap_mason_error('SGN=HASH(0x183e9870)', 'CODE(0x1d354760)') called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 67 | |
| # SGN::Role::Site::Mason::forward_to_mason_view('SGN=HASH(0x183e9870)', '/cview/map/index.mas', 'dbh', 'CXGN::DB::Connection=HASH(0x1e5749b0)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', ...) called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 27 | |
| # eval {...} called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 2 | |
| # at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 92 | |
| # Failed test 'Contig map returned OK' | |
| # at t/validate/cview.t line 20. | |
| # fetch actually returned code '500': http://banana:3000/cview/map.pl?map_id=c9 | |
| # error dump skipped, set DUMP_ERROR_CONTENT=1 to enable error dump files | |
| # Catalyst error screen: CGI invocation failed: No database found! at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/Map/SGN/Contig.pm line 93. | |
| # at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/Map/SGN/Contig.pm line 93 | |
| # CXGN::Cview::Map::SGN::Contig::get_chromosome('CXGN::Cview::Map::SGN::Contig=HASH(0x17638670)', 12) called at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/Map/SGN/Contig.pm line 155 | |
| # CXGN::Cview::Map::SGN::Contig::get_overview_chromosome('CXGN::Cview::Map::SGN::Contig=HASH(0x17638670)', 12) called at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/MapOverviews/Generic.pm line 121 | |
| # CXGN::Cview::MapOverviews::Generic::render('CXGN::Cview::MapOverviews::Generic=HASH(0x1760bdc0)') called at /crypt/rob/cxgn/git/sgn/../Cview/lib/CXGN/Cview/MapOverviews/Generic.pm line 230 | |
| # CXGN::Cview::MapOverviews::Generic::render_map('CXGN::Cview::MapOverviews::Generic=HASH(0x1760bdc0)') called at /crypt/rob/cxgn/git/sgn/mason/cview/map/overview.mas line 131 | |
| # HTML::Mason::Commands::__ANON__('dbh', 'CXGN::DB::Connection=HASH(0x1760a450)', 'map', 'CXGN::Cview::Map::SGN::Contig=HASH(0x17638670)', 'size', undef, 'hilite_markers', 'ARRAY(0x1761b1f8)', 'map_items', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Component.pm line 135 | |
| # HTML::Mason::Component::run('HTML::Mason::Component::FileBased=HASH(0x17618220)', 'dbh', 'CXGN::DB::Connection=HASH(0x1760a450)', 'map', 'CXGN::Cview::Map::SGN::Contig=HASH(0x17638670)', 'size', undef, 'hilite_markers', 'ARRAY(0x1761b1f8)', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1302 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1292 | |
| # HTML::Mason::Request::comp(undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0x1760a450)', 'map', 'CXGN::Cview::Map::SGN::Contig=HASH(0x17638670)', 'size', undef, 'hilite_markers', ...) called at /crypt/rob/cxgn/git/sgn/mason/cview/map/index.mas line 215 | |
| # HTML::Mason::Commands::__ANON__('dbh', 'CXGN::DB::Connection=HASH(0x1760a450)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', undef, 'physical', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Component.pm line 135 | |
| # HTML::Mason::Component::run('HTML::Mason::Component::FileBased=HASH(0x17f56888)', 'dbh', 'CXGN::DB::Connection=HASH(0x1760a450)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', undef, ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1302 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1292 | |
| # HTML::Mason::Request::comp(undef, undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0x1760a450)', 'map_version_id', undef, 'map_id', 'c9', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 955 | |
| # HTML::Mason::Request::call_next('HTML::Mason::Request=HASH(0x17635758)') called at /crypt/rob/cxgn/git/sgn/mason/autohandler line 3 | |
| # HTML::Mason::Commands::__ANON__('dbh', 'CXGN::DB::Connection=HASH(0x1760a450)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', undef, 'physical', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Component.pm line 135 | |
| # HTML::Mason::Component::run('HTML::Mason::Component::FileBased=HASH(0x16f3dd88)', 'dbh', 'CXGN::DB::Connection=HASH(0x1760a450)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', undef, ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1302 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 1292 | |
| # HTML::Mason::Request::comp(undef, undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0x1760a450)', 'map_version_id', undef, 'map_id', 'c9', ...) called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 483 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 483 | |
| # eval {...} called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm line 433 | |
| # HTML::Mason::Request::exec('HTML::Mason::Request=HASH(0x17635758)') called at /crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Interp.pm line 342 | |
| # HTML::Mason::Interp::exec(undef, undef, 'dbh', 'CXGN::DB::Connection=HASH(0x1760a450)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', ...) called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 67 | |
| # SGN::Role::Site::Mason::__ANON__() called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 121 | |
| # eval {...} called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 121 | |
| # SGN::Role::Site::Mason::_trap_mason_error('SGN=HASH(0x1d353650)', 'CODE(0x1e2777c8)') called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 67 | |
| # SGN::Role::Site::Mason::forward_to_mason_view('SGN=HASH(0x1d353650)', '/cview/map/index.mas', 'dbh', 'CXGN::DB::Connection=HASH(0x1760a450)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', ...) called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 27 | |
| # eval {...} called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 2 | |
| # | |
| # Stack: | |
| # [/crypt/rob/cpan-lib/lib/perl5/HTML/Mason/Request.pm:1345] | |
| # [/crypt/rob/cxgn/git/sgn/mason/cview/map/index.mas:215] | |
| # [/crypt/rob/cxgn/git/sgn/mason/autohandler:3] | |
| # at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 128 | |
| # SGN::Role::Site::Mason::_trap_mason_error('SGN=HASH(0x1d353650)', 'CODE(0x1e2777c8)') called at /crypt/rob/cxgn/git/sgn/bin/../lib/SGN/Role/Site/Mason.pm line 67 | |
| # SGN::Role::Site::Mason::forward_to_mason_view('SGN=HASH(0x1d353650)', '/cview/map/index.mas', 'dbh', 'CXGN::DB::Connection=HASH(0x1760a450)', 'map_version_id', undef, 'map_id', 'c9', 'hilite', ...) called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 27 | |
| # eval {...} called at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 2 | |
| # at /crypt/rob/cxgn/git/sgn/cgi-bin/cview/map.pl line 92 | |
| # Failed test 'Contig map returned OK' | |
| # at t/lib/SGN/Test/WWW/Mechanize.pm line 217. | |
| # fetch actually returned code '500': http://banana:3000/cview/map.pl?map_id=c9 | |
| # error dump skipped, set DUMP_ERROR_CONTENT=1 to enable error dump files | |
| # Looks like you failed 2 tests of 49. | |
| t/validate/cview.t ............................. | |
| Dubious, test returned 2 (wstat 512, 0x200) | |
| Failed 2/49 subtests | |
| (less 4 skipped subtests: 43 okay) | |
| # Catalyst error screen: feature with feature_id = '12721702' not found | |
| # Failed test 'feature request with id returned OK' | |
| # at t/validate/feature.t line 25. | |
| # fetch actually returned code '500': http://banana:3000/feature/view/id/12721702 | |
| # error dump skipped, set DUMP_ERROR_CONTENT=1 to enable error dump files | |
| # Catalyst error screen: feature with feature_id = '12721702' not found | |
| # Failed test 'feature request with id returned OK' | |
| # at t/lib/SGN/Test/WWW/Mechanize.pm line 217. | |
| # fetch actually returned code '500': http://banana:3000/feature/view/id/12721702 | |
| # error dump skipped, set DUMP_ERROR_CONTENT=1 to enable error dump files | |
| # Catalyst error screen: feature with name = 'this_does_not_exist' not found | |
| # Failed test 'feature request with nonexistent name returned OK' | |
| # at t/validate/feature.t line 25. | |
| # fetch actually returned code '500': http://banana:3000/feature/view/name/this_does_not_exist | |
| # error dump skipped, set DUMP_ERROR_CONTENT=1 to enable error dump files | |
| # Catalyst error screen: feature with name = 'this_does_not_exist' not found | |
| # Failed test 'feature request with nonexistent name returned OK' | |
| # at t/lib/SGN/Test/WWW/Mechanize.pm line 217. | |
| # fetch actually returned code '500': http://banana:3000/feature/view/name/this_does_not_exist | |
| # error dump skipped, set DUMP_ERROR_CONTENT=1 to enable error dump files | |
| # Looks like you failed 4 tests of 14. | |
| t/validate/feature.t ........................... | |
| Dubious, test returned 4 (wstat 1024, 0x400) | |
| Failed 4/14 subtests | |
| (less 8 skipped subtests: 2 okay) | |
| t/validate/gem.t ............................... ok | |
| t/validate/markers.t ........................... ok | |
| t/validate/other.t ............................. ok | |
| t/validate/phenome.t ........................... ok | |
| # Catalyst error screen: CGI invocation failed: Can't locate object method "ci_lod_file" via package "CXGN::Phenome::Population" at /crypt/rob/cxgn/git/sgn/cgi-bin/phenome/population_indls.pl line 1094. | |
| # at /crypt/rob/cxgn/git/sgn/cgi-bin/phenome/population_indls.pl line 1094 | |
| # CXGN::Phenome::PopulationIndlsDetailPage::outfile_list('CXGN::Phenome::PopulationIndlsDetailPage=HASH(0x20d7b978)') called at /crypt/rob/cxgn/git/sgn/cgi-bin/phenome/population_indls.pl line 1204 | |
| # CXGN::Phenome::PopulationIndlsDetailPage::run_r('CXGN::Phenome::PopulationIndlsDetailPage=HASH(0x20d7b978)') called at /crypt/rob/cxgn/git/sgn/cgi-bin/phenome/population_indls.pl line 707 | |
| # CXGN::Phenome::PopulationIndlsDetailPage::qtl_plot('CXGN::Phenome::PopulationIndlsDetailPage=HASH(0x20d7b978)') called at /crypt/rob/cxgn/git/sgn/cgi-bin/phenome/population_indls.pl line 428 | |
| # CXGN::Phenome::PopulationIndlsDetailPage::display_page('CXGN::Phenome::PopulationIndlsDetailPage=HASH(0x20d7b978)') called at /crypt/rob/cxgn/git/sgn/bin/../lib/CXGN/Page/Form/SimpleFormPage.pm line 355 | |
| # CXGN::Page::Form::SimpleFormPage::view('CXGN::Phenome::PopulationIndlsDetailPage=HASH(0x20d7b978)') called at /crypt/rob/cxgn/git/sgn/bin/../lib/CXGN/Page/Form/SimpleFormPage.pm line 108 | |
| # CXGN::Page::Form::SimpleFormPage::new('CXGN::Phenome::PopulationIndlsDetailPage') called at /crypt/rob/cxgn/git/sgn/cgi-bin/phenome/population_indls.pl line 70 | |
| # CXGN::Phenome::PopulationIndlsDetailPage::new('CXGN::Phenome::PopulationIndlsDetailPage') called at /crypt/rob/cxgn/git/sgn/cgi-bin/phenome/population_indls.pl line 18 | |
| # eval {...} called at /crypt/rob/cxgn/git/sgn/cgi-bin/phenome/population_indls.pl line 2 | |
| # at /crypt/rob/cxgn/git/sgn/cgi-bin/phenome/population_indls.pl line 1803 | |
| # Failed test 'QTL Analysis Page returned OK' | |
| # at t/validate/qtl.t line 31. | |
| # fetch actually returned code '500': http://banana:3000/phenome/population_indls.pl?population_id=12&cvterm_id=47515 | |
| # error dump skipped, set DUMP_ERROR_CONTENT=1 to enable error dump files | |
| # Catalyst error screen: CGI invocation failed: Can't locate object method "ci_lod_file" via package "CXGN::Phenome::Population" at /crypt/rob/cxgn/git/sgn/cgi-bin/phenome/population_indls.pl line 1094. | |
| # at /crypt/rob/cxgn/git/sgn/cgi-bin/phenome/population_indls.pl line 1094 | |
| # CXGN::Phenome::PopulationIndlsDetailPage::outfile_list('CXGN::Phenome::PopulationIndlsDetailPage=HASH(0x183f2d30)') called at /crypt/rob/cxgn/git/sgn/cgi-bin/phenome/population_indls.pl line 1204 | |
| # CXGN::Phenome::PopulationIndlsDetailPage::run_r('CXGN::Phenome::PopulationIndlsDetailPage=HASH(0x183f2d30)') called at /crypt/rob/cxgn/git/sgn/cgi-bin/phenome/population_indls.pl line 707 | |
| # CXGN::Phenome::PopulationIndlsDetailPage::qtl_plot('CXGN::Phenome::PopulationIndlsDetailPage=HASH(0x183f2d30)') called at /crypt/rob/cxgn/git/sgn/cgi-bin/phenome/population_indls.pl line 428 | |
| # CXGN::Phenome::PopulationIndlsDetailPage::display_page('CXGN::Phenome::PopulationIndlsDetailPage=HASH(0x183f2d30)') called at /crypt/rob/cxgn/git/sgn/bin/../lib/CXGN/Page/Form/SimpleFormPage.pm line 355 | |
| # CXGN::Page::Form::SimpleFormPage::view('CXGN::Phenome::PopulationIndlsDetailPage=HASH(0x183f2d30)') called at /crypt/rob/cxgn/git/sgn/bin/../lib/CXGN/Page/Form/SimpleFormPage.pm line 108 | |
| # CXGN::Page::Form::SimpleFormPage::new('CXGN::Phenome::PopulationIndlsDetailPage') called at /crypt/rob/cxgn/git/sgn/cgi-bin/phenome/population_indls.pl line 70 | |
| # CXGN::Phenome::PopulationIndlsDetailPage::new('CXGN::Phenome::PopulationIndlsDetailPage') called at /crypt/rob/cxgn/git/sgn/cgi-bin/phenome/population_indls.pl line 18 | |
| # eval {...} called at /crypt/rob/cxgn/git/sgn/cgi-bin/phenome/population_indls.pl line 2 | |
| # at /crypt/rob/cxgn/git/sgn/cgi-bin/phenome/population_indls.pl line 1803 | |
| # Failed test 'QTL Analysis Page returned OK' | |
| # at t/lib/SGN/Test/WWW/Mechanize.pm line 217. | |
| # fetch actually returned code '500': http://banana:3000/phenome/population_indls.pl?population_id=12&cvterm_id=47515 | |
| # error dump skipped, set DUMP_ERROR_CONTENT=1 to enable error dump files | |
| # Looks like you failed 2 tests of 7. | |
| t/validate/qtl.t ............................... | |
| Dubious, test returned 2 (wstat 512, 0x200) | |
| Failed 2/7 subtests | |
| (less 4 skipped subtests: 1 okay) | |
| t/validate/secretom.t .......................... ok | |
| t/validate/tomato_genome.t ..................... ok | |
| t/view_Email-ErrorEmail.t ...................... ok | |
| t/view_Email.t ................................. ok | |
| Test Summary Report | |
| ------------------- | |
| t/cview/map.t (Wstat: 2048 Tests: 76 Failed: 8) | |
| Failed tests: 7-8, 15-16, 71-72, 75-76 | |
| Non-zero exit status: 8 | |
| t/integration/api/sequence.t (Wstat: 512 Tests: 12 Failed: 2) | |
| Failed tests: 11-12 | |
| Non-zero exit status: 2 | |
| t/integration/feature_invalid.t (Wstat: 1536 Tests: 6 Failed: 6) | |
| Failed tests: 1-6 | |
| Non-zero exit status: 6 | |
| t/validate/cview.t (Wstat: 512 Tests: 49 Failed: 2) | |
| Failed tests: 1, 4 | |
| Non-zero exit status: 2 | |
| t/validate/feature.t (Wstat: 1024 Tests: 14 Failed: 4) | |
| Failed tests: 1, 4, 8, 11 | |
| Non-zero exit status: 4 | |
| t/validate/qtl.t (Wstat: 512 Tests: 7 Failed: 2) | |
| Failed tests: 1, 4 | |
| Non-zero exit status: 2 | |
| Files=78, Tests=1750, 1216 wallclock secs ( 0.39 usr 0.07 sys + 273.40 cusr 9.80 csys = 283.66 CPU) | |
| Result: FAIL |
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