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rcastelo / downloadsbydeps.R
Last active July 14, 2020 16:07
Bioconductor downloads and dependencies
library(igraph)
library(BiocPkgTools)
d <- biocDownloadStats()
pkgs <- biocPkgList()
whmaintainerpkgs <- grep("maintainer", pkgs$Maintainer)
coreteam <- c("interdonato", "michafla", "jmacdon",
"morgan", "andrzej", "pages",
@rcastelo
rcastelo / depburden.R
Last active February 22, 2020 06:38
Functions to help identifying scarcely used R package dependencies representing a large installation burden
## this file contains 4 functions using several R and Bioconductor
## packages to help identifying scarcely used R package dependencies
## representing a large installation burden. it has been created
## upon the following discussion thread on the bioc-devel mailing list:
## https://stat.ethz.ch/pipermail/bioc-devel/2020-February/016146.html
##
## to use these functions you need to build a database of package
## information using the following lines:
##
## repos <- BiocManager::repositories()[c("BioCsoft", "CRAN")]