dockerfile for EMSoft (work in progress...)

Dockerfile

#FROM ubuntu:20.04
FROM linuxserver/code-server:latest


#INSTALL CMAKE

ENV TZ=Europe/Paris
RUN ln -snf /usr/share/zoneinfo/$TZ /etc/localtime && echo $TZ > /etc/timezone

RUN apt-get update
RUN apt-get install -y gfortran g++ build-essential git libssl-dev wget libopenblas-dev ocl-icd-opencl-dev qtdeclarative5-dev libqt5svg5* openssh-server libhdf5-dev

RUN cd \root
RUN wget https://github.com/Kitware/CMake/releases/download/v3.20.2/cmake-3.20.2.tar.gz &&\
    tar -zxvf cmake-3.20.2.tar.gz &&\
    cd cmake-3.20.2 &&\
    ./bootstrap &&\
    make &&\
    make install 



# GIT 
RUN cd \root &&\
    git clone https://github.com/EMsoft-org/EMsoftSuperbuild.git

RUN cd /root &&\
  git clone https://github.com/EMsoft-org/EMsoftData.git

RUN cd /root &&\
    git clone https://github.com/EMsoft-org/EMsoft.git
    
RUN cd /root &&\
    git clone https://github.com/EMsoft-org/SHTfile.git &&\
    git clone https://github.com/EMsoft-org/SHTdatabase   


RUN cd /root &&\
    git clone https://github.com/Alexii-Ann/EMSphInx.git


RUN cd /root &&\
    git clone https://bitbucket.hdfgroup.org/scm/hdffv/hdf5.git

# INSTALL EMSOFTSUPERBUILD


RUN mkdir /root/EMsoft_SDK

#RUN cd \root &&\
#    mkdir ~/EMsoft_SDK/superbuild/ &&\
#    mkdir ~/EMsoft_SDK/superbuild/Qt5.12.4 &&\
#    mkdir ~/EMsoft_SDK/superbuild/Qt5.12.4/Download &&\
#    cd ~/EMsoft_SDK/superbuild/Qt5.12.4/Download &&\
#    wget -nv http://qt.mirror.constant.com/archive/qt/5.12/5.12.4/qt-opensource-linux-x64-5.12.4.run

RUN cd /root/EMsoftSuperbuild &&\
    mkdir Debug &&\
    cd Debug  &&\
    cmake -DEMsoft_SDK=/root/EMsoft_SDK -DCMAKE_BUILD_TYPE=Debug ../  &&\
    #cmake -DEMsoft_SDK=/root/EMsoft_SDK -DINSTALL_QT5=ON -DCMAKE_BUILD_TYPE=Debug ../  &&\
#    make -j &&\ 
    cd ../ &&\
    mkdir Release &&\
    cd Release &&\
#    cmake -DEMsoft_SDK=/root/EMsoft_SDK -DINSTALL_QT5=ON -DCMAKE_BUILD_TYPE=Release ../ &&\
   cmake -DEMsoft_SDK=/root/EMsoft_SDK -DCMAKE_BUILD_TYPE=Release ../
#    make -j

RUN cd /root/EMsoftSuperbuild/Debug &&\
    make -j &&\
    cd ../Release &&\
    make -j
    


# INSTALL EMSOFT

    
RUN cd /root/EMsoft &&\
    mkdir Release &&\
    cd Release &&\
    cmake -DCMAKE_BUILD_TYPE=Release -DEMsoft_ENABLE_EMsoftWorkbench=OFF -DEMsoft_SDK=/root/EMsoft_SDK ../../EMsoft &&\
    #make -j &&\
    cd ../ &&\
    mkdir Debug &&\
    cd Debug &&\
    cmake -DCMAKE_BUILD_TYPE=Debug -DEMsoft_ENABLE_EMsoftWorkbench=OFF -DEMsoft_SDK=/root/EMsoft_SDK ../../EMsoft
    #make -j 
   
RUN cd /root/EMsoft/Debug &&\
    make -j &&\
    cd ../Release &&\
    make -j


# INSTALL EMSPHINX

RUN cd /root &&\
    wget http://fr.archive.ubuntu.com/ubuntu/pool/universe/h/hdf5/libhdf5-cpp-100_1.10.0-patch1+docs-4_amd64.deb &&\
    wget http://fr.archive.ubuntu.com/ubuntu/pool/universe/h/hdf5/libhdf5-100_1.10.0-patch1+docs-4_amd64.deb &&\
    dpkg -i *.deb


RUN rm -R /root/EMSphInx

RUN cd /root &&\
    git clone https://github.com/EMsoft-org/EMSphInx.git


RUN cd /root &&\
    mkdir EMSphInxBuild &&\
    cd EMSphInxBuild &&\
   # sed -i -e '107d' /root/EMSphInx/depends/HDF5.cmake &&\
   # sed -i -e '116d' /root/EMSphInx/depends/HDF5.cmake &&\

    cmake -DEMSPHINX_BUILD_HDF5=ON -DHDF5_ROOT="/root/EMsoft_SDK/hdf5-1.10.7-Release"  ../EMSphInx 
 
 

    
RUN cd /root &&\
sed -i -e '70d' /root/EMSphInx/depends/FFTW.cmake &&\
sed -i '70i	set(FFTW_URL "ftp://ftp.fftw.org/pub/fftw/fftw-${FFTW_VER}.tar.gz")' /root/EMSphInx/depends/FFTW.cmake &&\
sed -i -e '44d' /root/EMSphInx/depends/HDF5.cmake


RUN cd /root/EMSphInxBuild &&\
    make -j




RUN mkdir /var/run/sshd
#EXPOSE 22
EXPOSE 8443
CMD    ["/usr/sbin/sshd", "-D"]