Skip to content

Instantly share code, notes, and snippets.

@renaud

renaud/parse_obo.py

Created April 29, 2014 22:15
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save renaud/15804ab968cfa1d96c64 to your computer and use it in GitHub Desktop.
Save renaud/15804ab968cfa1d96c64 to your computer and use it in GitHub Desktop.
Download ZIP
Parse OBO
Raw
parse_obo.py
#http://techoverflow.net/blog/2013/11/18/a-geneontology-obo-v1.2-parser-in-python/
import go_obo_parser
for p in go_obo_parser.parseGOOBO('....../pro.obo'):
if 'is_a' in p and p['is_a'] == 'PR:000000001 ! protein':
print p['name']
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment