Ron Gejman rgejman
rgejman
/ gist:ddf8fe65a17298c4ff794f25059065d6
Last active
April 14, 2017 11:59
Install commonly used R packages
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| options(repos=structure(c(CRAN="http://cran.rstudio.com/"))) | |
| source("https://bioconductor.org/biocLite.R") | |
| biocLite() | |
| biocLite("org.Hs.eg.db") | |
| biocLite("cummeRbund") | |
| install.packages("tidyverse") |
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| ### Keybase proof | |
| I hereby claim: | |
| * I am rgejman on github. | |
| * I am rgejman (https://keybase.io/rgejman) on keybase. | |
| * I have a public key whose fingerprint is 7867 9A0C 376D 8246 72FC 302F 983C 962E 1B16 8A87 | |
| To claim this, I am signing this object: |
rgejman
/ generate_all_k_mers.rb
Created
March 28, 2010 18:27
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| #Adapted from http://www.bioperl.org/wiki/Getting_all_k-mer_combinations_of_residues | |
| #Generate all k-mers in Ruby. Change the letters and/or length to customize for your purposed. | |
| LETTERS = ["A", "C", "G", "T"] | |
| LENGTH = 6 | |
| words = LETTERS | |
| for i in 0...(LENGTH-1) | |
| newwords = [] | |
| for w in words |