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@rgerkin
Created August 21, 2015 23:10
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wget http://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -O miniconda.sh
chmod +x miniconda.sh
./miniconda.sh -b
export PATH=~/miniconda/bin:$PATH
conda update --yes conda
conda install --yes python=2.7 atlas numpy scipy matplotlib
sudo apt-get update
sudo apt-get install gcc libxml2-dev libxslt-dev python-dev lib32z1-dev
sudo apt-get install default-jre
pip install -U git+https://github.com/neuralensemble/libNeuroML@development
pip install git+https://github.com/purcell/airspeed.git
pip install --allow-all-external git+https://github.com/rgerkin/pyNeuroML.git
pip install --allow-all-external git+https://github.com/neuralensemble/python-neo.git
pip install --allow-all-external git+https://github.com/neuralensemble/elephant.git
pip install git+https://github.com/rgerkin/sciunit.git
pip install git+https://github.com/rgerkin/neuronunit.git
git clone https://github.com/rgerkin/neuronunit.git
mv neuronunit/example.py ~/
rm -rdf neuronunit
python example.py
git clone https://github.com/openworm/ChannelWorm
cd ChannelWorm
python setup.py install
cd tests
python IVCurve_Model.py
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