Created
August 21, 2015 23:10
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wget http://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -O miniconda.sh | |
chmod +x miniconda.sh | |
./miniconda.sh -b | |
export PATH=~/miniconda/bin:$PATH | |
conda update --yes conda | |
conda install --yes python=2.7 atlas numpy scipy matplotlib | |
sudo apt-get update | |
sudo apt-get install gcc libxml2-dev libxslt-dev python-dev lib32z1-dev | |
sudo apt-get install default-jre | |
pip install -U git+https://github.com/neuralensemble/libNeuroML@development | |
pip install git+https://github.com/purcell/airspeed.git | |
pip install --allow-all-external git+https://github.com/rgerkin/pyNeuroML.git | |
pip install --allow-all-external git+https://github.com/neuralensemble/python-neo.git | |
pip install --allow-all-external git+https://github.com/neuralensemble/elephant.git | |
pip install git+https://github.com/rgerkin/sciunit.git | |
pip install git+https://github.com/rgerkin/neuronunit.git | |
git clone https://github.com/rgerkin/neuronunit.git | |
mv neuronunit/example.py ~/ | |
rm -rdf neuronunit | |
python example.py | |
git clone https://github.com/openworm/ChannelWorm | |
cd ChannelWorm | |
python setup.py install | |
cd tests | |
python IVCurve_Model.py |
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