rhshah

REF=/proj/b2010040/private/nobackup/autoseqer-genome/genome/human_g1k_v37_decoy.fasta
DICT=/proj/b2010040/private/nobackup/autoseqer-genome/genome/human_g1k_v37_decoy.dict
GATKJAR=/home/daniel.klevebring/projects/tcga-maf-to-vcf/GenomeAnalysisTK.jar 

WORKDIR=$HOME/Crisp/dakl/tcga-maf-to-vcf
mkdir -p $WORKDIR
cd $WORKDIR

#unpack maf to workdir
tar xvfz ~/projects/tcga-maf-to-vcf/pancan_cleaned_mafs.tar.gz 

rhshah

stat_smooth_func <- function(mapping = NULL, data = NULL,
                        geom = "smooth", position = "identity",
                        ...,
                        method = "auto",
                        formula = y ~ x,
                        se = TRUE,
                        n = 80,
                        span = 0.75,
                        fullrange = FALSE,
                        level = 0.95,

rhshah

# See http://pacha.hk/2017-07-12_r_and_python_via_homebrew.html

# XCode CLT
xcode-select --install

# Update Homebrew and add formulae
brew update

# Check for broken dependencies and/or outdated packages
brew doctor

rhshah

#Install and use pip in a local directory without root/sudo access. #####By: @saurabhshri

##Why? Many users when are given server access, do not have root (or sudo) privileges and can not simply do sudo apt-get install python-pip . Here's an easy way you can install and use pip without root (or sudo) access in a local directory. Note : This works without easy_install too.

##How?

rhshah

Keybase proof

I hereby claim:

• I am rhshah on github.
• I am rhshah (https://keybase.io/rhshah) on keybase.
• I have a public key whose fingerprint is A181 1641 8177 A8F6 F941 33AF 25FB 5E48 2056 63F4

To claim this, I am signing this object: