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docker error
∙ docker build --no-cache --rm -f "Dockerfile" -t nab:latest "."
Sending build context to Docker daemon 298.8MB
Step 1/9 : FROM ubuntu:18.04 as base
---> ccc6e87d482b
Step 2/9 : FROM python:3.6.10-alpine3.11
---> 781b53c4648c
Step 3/9 : COPY --from=base . .
---> 38c34cef2881
Step 4/9 : RUN apt update && apt install -y gcc
---> Running in 627c731ef6f0
WARNING: apt does not have a stable CLI interface. Use with caution in scripts.
Get:1 http://security.ubuntu.com/ubuntu bionic-security InRelease [88.7 kB]
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Get:3 http://security.ubuntu.com/ubuntu bionic-security/universe amd64 Packages [817 kB]
Get:4 http://security.ubuntu.com/ubuntu bionic-security/main amd64 Packages [814 kB]
Get:5 http://archive.ubuntu.com/ubuntu bionic-updates InRelease [88.7 kB]
Get:6 http://security.ubuntu.com/ubuntu bionic-security/multiverse amd64 Packages [7061 B]
Get:7 http://security.ubuntu.com/ubuntu bionic-security/restricted amd64 Packages [27.2 kB]
Get:8 http://archive.ubuntu.com/ubuntu bionic-backports InRelease [74.6 kB]
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Get:17 http://archive.ubuntu.com/ubuntu bionic-backports/main amd64 Packages [2496 B]
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Fetched 17.5 MB in 6s (3183 kB/s)
Reading package lists...
Building dependency tree...
Reading state information...
18 packages can be upgraded. Run 'apt list --upgradable' to see them.
WARNING: apt does not have a stable CLI interface. Use with caution in scripts.
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-7 gcc-7
gcc-7-base libasan4 libatomic1 libbinutils libc-dev-bin libc6-dev libcc1-0
libcilkrts5 libgcc-7-dev libgomp1 libisl19 libitm1 liblsan0 libmpc3 libmpfr6
libmpx2 libquadmath0 libtsan0 libubsan0 linux-libc-dev manpages manpages-dev
Suggested packages:
binutils-doc cpp-doc gcc-7-locales gcc-multilib make autoconf automake
libtool flex bison gdb gcc-doc gcc-7-multilib gcc-7-doc libgcc1-dbg
libgomp1-dbg libitm1-dbg libatomic1-dbg libasan4-dbg liblsan0-dbg
libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libmpx2-dbg libquadmath0-dbg
glibc-doc man-browser
The following NEW packages will be installed:
binutils binutils-common binutils-x86-64-linux-gnu cpp cpp-7 gcc gcc-7
gcc-7-base libasan4 libatomic1 libbinutils libc-dev-bin libc6-dev libcc1-0
libcilkrts5 libgcc-7-dev libgomp1 libisl19 libitm1 liblsan0 libmpc3 libmpfr6
libmpx2 libquadmath0 libtsan0 libubsan0 linux-libc-dev manpages manpages-dev
0 upgraded, 29 newly installed, 0 to remove and 18 not upgraded.
Need to get 28.4 MB of archives.
After this operation, 118 MB of additional disk space will be used.
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Get:20 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libcilkrts5 amd64 7.4.0-1ubuntu1~18.04.1 [42.5 kB]
Get:21 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libmpx2 amd64 8.3.0-6ubuntu1~18.04.1 [11.6 kB]
Get:22 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 libquadmath0 amd64 8.3.0-6ubuntu1~18.04.1 [133 kB]
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Get:24 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 gcc-7 amd64 7.4.0-1ubuntu1~18.04.1 [7463 kB]
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Get:26 http://archive.ubuntu.com/ubuntu bionic/main amd64 libc-dev-bin amd64 2.27-3ubuntu1 [71.8 kB]
Get:27 http://archive.ubuntu.com/ubuntu bionic-updates/main amd64 linux-libc-dev amd64 4.15.0-76.86 [999 kB]
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Get:29 http://archive.ubuntu.com/ubuntu bionic/main amd64 manpages-dev all 4.15-1 [2217 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libmpfr6:amd64 (4.0.1-1) ...
Setting up liblsan0:amd64 (8.3.0-6ubuntu1~18.04.1) ...
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Setting up libmpx2:amd64 (8.3.0-6ubuntu1~18.04.1) ...
Setting up libmpc3:amd64 (1.1.0-1) ...
Setting up libc-dev-bin (2.27-3ubuntu1) ...
Setting up manpages-dev (4.15-1) ...
Setting up libc6-dev:amd64 (2.27-3ubuntu1) ...
Setting up libitm1:amd64 (8.3.0-6ubuntu1~18.04.1) ...
Setting up libisl19:amd64 (0.19-1) ...
Setting up libasan4:amd64 (7.4.0-1ubuntu1~18.04.1) ...
Setting up libbinutils:amd64 (2.30-21ubuntu1~18.04.2) ...
Setting up libcilkrts5:amd64 (7.4.0-1ubuntu1~18.04.1) ...
Setting up libubsan0:amd64 (7.4.0-1ubuntu1~18.04.1) ...
Setting up libgcc-7-dev:amd64 (7.4.0-1ubuntu1~18.04.1) ...
Setting up cpp-7 (7.4.0-1ubuntu1~18.04.1) ...
Setting up binutils-x86-64-linux-gnu (2.30-21ubuntu1~18.04.2) ...
Setting up cpp (4:7.4.0-1ubuntu2.3) ...
Setting up binutils (2.30-21ubuntu1~18.04.2) ...
Setting up gcc-7 (7.4.0-1ubuntu1~18.04.1) ...
Setting up gcc (4:7.4.0-1ubuntu2.3) ...
Processing triggers for libc-bin (2.27-3ubuntu1) ...
Removing intermediate container 627c731ef6f0
---> e491ea83d34a
Step 5/9 : COPY . /nab
---> a672959175ef
Step 6/9 : WORKDIR /nab
---> Running in 915ed799ce23
Removing intermediate container 915ed799ce23
---> c64eede8e63e
Step 7/9 : RUN pip install numpy
---> Running in 285d6ca4251a
Collecting numpy
Downloading numpy-1.18.1.zip (5.4 MB)
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing wheel metadata: started
Preparing wheel metadata: finished with status 'done'
Building wheels for collected packages: numpy
Building wheel for numpy (PEP 517): started
Building wheel for numpy (PEP 517): still running...
Building wheel for numpy (PEP 517): finished with status 'done'
Created wheel for numpy: filename=numpy-1.18.1-cp36-cp36m-linux_x86_64.whl size=14812055 sha256=052d5d81b18a9f7494e2eca68f1aada4da43e6924ead4fc462382485781fe529
Stored in directory: /root/.cache/pip/wheels/92/18/20/83339b2576b5911519a6b616d8b4a6df8b14358ba5cd612a0b
Successfully built numpy
Installing collected packages: numpy
Successfully installed numpy-1.18.1
Removing intermediate container 285d6ca4251a
---> a691ce767148
Step 8/9 : RUN pip install cython
---> Running in c585809fca24
Processing /root/.cache/pip/wheels/7e/b2/fb/0754cded60800a012a0a67dcf820bc70355a1017f762341a13/Cython-0.29.15-cp36-cp36m-linux_x86_64.whl
Installing collected packages: cython
Successfully installed cython-0.29.15
Removing intermediate container c585809fca24
---> cc4d75106c71
Step 9/9 : RUN pip install pandas
---> Running in a68399dd17bd
Collecting pandas
Downloading pandas-1.0.1.tar.gz (4.9 MB)
Installing build dependencies: started
Installing build dependencies: still running...
Installing build dependencies: still running...
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'error'
ERROR: Command errored out with exit status 1:
command: /usr/local/bin/python /usr/local/lib/python3.6/site-packages/pip/_vendor/pep517/_in_process.py get_requires_for_build_wheel /tmp/tmphqyux1dy
cwd: /tmp/pip-install-daxhpdjw/pandas
Complete output (55 lines):
Traceback (most recent call last):
File "/tmp/pip-build-env-km0xgh9i/overlay/lib/python3.6/site-packages/pkg_resources/__init__.py", line 360, in get_provider
module = sys.modules[moduleOrReq]
KeyError: 'numpy'
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/tmp/pip-build-env-km0xgh9i/overlay/lib/python3.6/site-packages/numpy/core/__init__.py", line 16, in <module>
from . import multiarray
ImportError: Error loading shared library ld-linux-x86-64.so.2: No such file or directory (needed by /tmp/pip-build-env-km0xgh9i/overlay/lib/python3.6/site-packages/numpy/core/multiarray.cpython-36m-x86_64-linux-gnu.so)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.6/site-packages/pip/_vendor/pep517/_in_process.py", line 257, in <module>
main()
File "/usr/local/lib/python3.6/site-packages/pip/_vendor/pep517/_in_process.py", line 240, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "/usr/local/lib/python3.6/site-packages/pip/_vendor/pep517/_in_process.py", line 91, in get_requires_for_build_wheel
return hook(config_settings)
File "/tmp/pip-build-env-km0xgh9i/overlay/lib/python3.6/site-packages/setuptools/build_meta.py", line 148, in get_requires_for_build_wheel
config_settings, requirements=['wheel'])
File "/tmp/pip-build-env-km0xgh9i/overlay/lib/python3.6/site-packages/setuptools/build_meta.py", line 128, in _get_build_requires
self.run_setup()
File "/tmp/pip-build-env-km0xgh9i/overlay/lib/python3.6/site-packages/setuptools/build_meta.py", line 250, in run_setup
self).run_setup(setup_script=setup_script)
File "/tmp/pip-build-env-km0xgh9i/overlay/lib/python3.6/site-packages/setuptools/build_meta.py", line 143, in run_setup
exec(compile(code, __file__, 'exec'), locals())
File "setup.py", line 757, in <module>
ext_modules=maybe_cythonize(extensions, compiler_directives=directives),
File "setup.py", line 517, in maybe_cythonize
numpy_incl = pkg_resources.resource_filename("numpy", "core/include")
File "/tmp/pip-build-env-km0xgh9i/overlay/lib/python3.6/site-packages/pkg_resources/__init__.py", line 1145, in resource_filename
return get_provider(package_or_requirement).get_resource_filename(
File "/tmp/pip-build-env-km0xgh9i/overlay/lib/python3.6/site-packages/pkg_resources/__init__.py", line 362, in get_provider
__import__(moduleOrReq)
File "/tmp/pip-build-env-km0xgh9i/overlay/lib/python3.6/site-packages/numpy/__init__.py", line 142, in <module>
from . import add_newdocs
File "/tmp/pip-build-env-km0xgh9i/overlay/lib/python3.6/site-packages/numpy/add_newdocs.py", line 13, in <module>
from numpy.lib import add_newdoc
File "/tmp/pip-build-env-km0xgh9i/overlay/lib/python3.6/site-packages/numpy/lib/__init__.py", line 8, in <module>
from .type_check import *
File "/tmp/pip-build-env-km0xgh9i/overlay/lib/python3.6/site-packages/numpy/lib/type_check.py", line 11, in <module>
import numpy.core.numeric as _nx
File "/tmp/pip-build-env-km0xgh9i/overlay/lib/python3.6/site-packages/numpy/core/__init__.py", line 26, in <module>
raise ImportError(msg)
ImportError:
Importing the multiarray numpy extension module failed. Most
likely you are trying to import a failed build of numpy.
If you're working with a numpy git repo, try `git clean -xdf` (removes all
files not under version control). Otherwise reinstall numpy.
Original error was: Error loading shared library ld-linux-x86-64.so.2: No such file or directory (needed by /tmp/pip-build-env-km0xgh9i/overlay/lib/python3.6/site-packages/numpy/core/multiarray.cpython-36m-x86_64-linux-gnu.so)
----------------------------------------
ERROR: Command errored out with exit status 1: /usr/local/bin/python /usr/local/lib/python3.6/site-packages/pip/_vendor/pep517/_in_process.py get_requires_for_build_wheel /tmp/tmphqyux1dy Check the logs for full command output.
The command '/bin/sh -c pip install pandas' returned a non-zero code: 1
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