Created
February 14, 2013 00:16
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| { | |
| "metadata": { | |
| "name": "Collecting tissues" | |
| }, | |
| "nbformat": 3, | |
| "nbformat_minor": 0, | |
| "worksheets": [ | |
| { | |
| "cells": [ | |
| { | |
| "cell_type": "code", | |
| "collapsed": false, | |
| "input": [ | |
| "import requests\n", | |
| "import pprint\n", | |
| "from IPython.core.display import Image\n", | |
| "from IPython.core.display import HTML" | |
| ], | |
| "language": "python", | |
| "metadata": {}, | |
| "outputs": [], | |
| "prompt_number": 188 | |
| }, | |
| { | |
| "cell_type": "code", | |
| "collapsed": false, | |
| "input": [ | |
| "API_listOfSpecimens = '''http://api.brain-map.org/api/v2/data/query.json?criteria=model::Specimen,rma::criteria,donor(products[abbreviation$eqHumanASD]),rma::options[num_rows$eq100]'''\n", | |
| "API_baseDetailString = '''http://human.brain-map.org/api/v2/data/Specimen/%d.json?wrap=true&include=donor(age,conditions),data_sets(products[id$in9,10,11,26,27],genes,treatments),specimen_images,specimen_types,well_known_files,structure'''\n", | |
| "API_listOfImages = '''http://api.brain-map.org/api/v2/data/SectionDataSet/%d.json?include=section_images'''\n", | |
| "TILE_baseURL = '''http://human.brain-map.org/tiles//'''\n", | |
| "TILE_thumbnail = '''/TileGroup/0-0-0.jpg'''" | |
| ], | |
| "language": "python", | |
| "metadata": {}, | |
| "outputs": [], | |
| "prompt_number": 158 | |
| }, | |
| { | |
| "cell_type": "code", | |
| "collapsed": false, | |
| "input": [ | |
| "def generateThumbnailURL(series_image, siTop, siLeft, siWidth, siHeight):\n", | |
| " returnStr = TILE_baseURL + series_image + TILE_thumbnail\n", | |
| " returnStr += '?siTop=' + siTop\n", | |
| " returnStr += '&siLeft=' + siLeft \n", | |
| " returnStr += '&siWidth=' + siWidth\n", | |
| " returnStr += '&siHeight=' + siHeight\n", | |
| " return returnStr" | |
| ], | |
| "language": "python", | |
| "metadata": {}, | |
| "outputs": [], | |
| "prompt_number": 176 | |
| }, | |
| { | |
| "cell_type": "code", | |
| "collapsed": false, | |
| "input": [ | |
| "r = requests.get(API_listOfSpecimens)\n", | |
| "listOfSpecimens = r.json()['msg']\n", | |
| "print len(listOfSpecimens)" | |
| ], | |
| "language": "python", | |
| "metadata": {}, | |
| "outputs": [ | |
| { | |
| "output_type": "stream", | |
| "stream": "stdout", | |
| "text": [ | |
| "59\n" | |
| ] | |
| } | |
| ], | |
| "prompt_number": 177 | |
| }, | |
| { | |
| "cell_type": "code", | |
| "collapsed": false, | |
| "input": [ | |
| "specimenToCopy = listOfSpecimens[0]\n", | |
| "\n", | |
| "keys_needed = ['id', 'donor_id', 'name', 'rna_integrity_number', 'specimen_id_path', 'structure_id']\n", | |
| "specimen = {}\n", | |
| "for key in keys_needed:\n", | |
| " specimen[key] = specimenToCopy[key]\n", | |
| "pprint.pprint(specimen)" | |
| ], | |
| "language": "python", | |
| "metadata": {}, | |
| "outputs": [ | |
| { | |
| "output_type": "stream", | |
| "stream": "stdout", | |
| "text": [ | |
| "{'donor_id': 12139,\n", | |
| " 'id': 706123,\n", | |
| " 'name': u'H355.vACC.01',\n", | |
| " 'rna_integrity_number': 7.5,\n", | |
| " 'specimen_id_path': u'/706123/',\n", | |
| " 'structure_id': 9712}\n" | |
| ] | |
| } | |
| ], | |
| "prompt_number": 178 | |
| }, | |
| { | |
| "cell_type": "code", | |
| "collapsed": false, | |
| "input": [ | |
| "specimenDetailJSON = API_baseDetailString % specimen['id']\n", | |
| "d = requests.get(specimenDetailJSON)\n", | |
| "print 'Request returned with response: %d' % d.status_code" | |
| ], | |
| "language": "python", | |
| "metadata": {}, | |
| "outputs": [ | |
| { | |
| "output_type": "stream", | |
| "stream": "stdout", | |
| "text": [ | |
| "Request returned with response: 200\n" | |
| ] | |
| } | |
| ], | |
| "prompt_number": 179 | |
| }, | |
| { | |
| "cell_type": "code", | |
| "collapsed": false, | |
| "input": [ | |
| "specimenFullDetails = d.json()['msg'][0]\n", | |
| "datasets = specimenFullDetails['data_sets']\n", | |
| "print 'Specimen collected from %s' % specimenFullDetails['structure']['name']\n", | |
| "print 'Specimen contains %d labeled series' % len(specimenFullDetails['data_sets'])\n", | |
| "\n", | |
| "for ds in datasets:\n", | |
| " \n", | |
| " if ds['treatments'][0]['tags'] == 'histology':\n", | |
| " print '%d - HIS: %s' % (ds['id'], ds['treatments'][0]['name'])\n", | |
| " \n", | |
| " elif ds['treatments'][0]['tags'] == 'In Situ Hybridization histology':\n", | |
| " \n", | |
| " for gene in ds['genes']:\n", | |
| " print '%d - ISH: %s - %s' % (ds['id'], gene['acronym'], gene['name']) \n", | |
| " \n", | |
| " sectionThickness = ds['section_thickness']\n", | |
| "\n" | |
| ], | |
| "language": "python", | |
| "metadata": {}, | |
| "outputs": [ | |
| { | |
| "output_type": "stream", | |
| "stream": "stdout", | |
| "text": [ | |
| "Specimen collected from Ventral Anterior Cingulate\n", | |
| "Specimen contains 6 labeled series\n", | |
| "100110258 - ISH: CALB1 - calbindin 1, 28kDa\n", | |
| "100109902 - ISH: PDE1A - phosphodiesterase 1A, calmodulin-dependent\n", | |
| "100108592 - HIS: NISSL\n", | |
| "100109829 - ISH: RORB - RAR-related orphan receptor B\n", | |
| "100110202 - ISH: PCP4 - Purkinje cell protein 4\n", | |
| "100109773 - ISH: NEFL - neurofilament, light polypeptide\n" | |
| ] | |
| } | |
| ], | |
| "prompt_number": 180 | |
| }, | |
| { | |
| "cell_type": "code", | |
| "collapsed": false, | |
| "input": [ | |
| "requestURL = API_listOfImages % datasets[0]['id']\n", | |
| "seriesImageData = requests.get(requestURL).json()['msg']" | |
| ], | |
| "language": "python", | |
| "metadata": {}, | |
| "outputs": [], | |
| "prompt_number": 181 | |
| }, | |
| { | |
| "cell_type": "code", | |
| "collapsed": false, | |
| "input": [ | |
| "example_series_image = seriesImageData[0]['section_images'][0]\n", | |
| "_siTop = str(example_series_image['y'])\n", | |
| "_siLeft = str(example_series_image['x'])\n", | |
| "_siHeight = str(example_series_image['height'])\n", | |
| "_siWidth = str(example_series_image['width'])\n", | |
| "_path = example_series_image['path']\n", | |
| "thumbnail = generateThumbnailURL(_path, _siTop, _siLeft, _siWidth, _siHeight)\n", | |
| "print thumbnail\n", | |
| "Image(url=thumbnail)" | |
| ], | |
| "language": "python", | |
| "metadata": {}, | |
| "outputs": [ | |
| { | |
| "output_type": "stream", | |
| "stream": "stdout", | |
| "text": [ | |
| "http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400111732/0400111732.aff/TileGroup/0-0-0.jpg?siTop=2176&siLeft=256&siWidth=16320&siHeight=14016\n" | |
| ] | |
| }, | |
| { | |
| "html": [ | |
| "<img src=\"http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400111732/0400111732.aff/TileGroup/0-0-0.jpg?siTop=2176&siLeft=256&siWidth=16320&siHeight=14016\" />" | |
| ], | |
| "output_type": "pyout", | |
| "prompt_number": 240, | |
| "text": [ | |
| "<IPython.core.display.Image at 0x2d59090>" | |
| ] | |
| } | |
| ], | |
| "prompt_number": 240 | |
| }, | |
| { | |
| "cell_type": "code", | |
| "collapsed": false, | |
| "input": [ | |
| "def generateGalleryString(series_image_list):\n", | |
| " # sort by section number, ascending\n", | |
| " \n", | |
| " gallery_str = ''\n", | |
| " \n", | |
| " import operator\n", | |
| " series_image_list.sort(key=operator.itemgetter('section_number'))\n", | |
| " \n", | |
| " for seriesImg in series_image_list:\n", | |
| " \n", | |
| " _siTop = str(seriesImg['y'])\n", | |
| " _siLeft = str(seriesImg['x'])\n", | |
| " _siHeight = str(seriesImg['height'])\n", | |
| " _siWidth = str(seriesImg['width'])\n", | |
| " _path = seriesImg['path']\n", | |
| " thumbnail = generateThumbnailURL(_path, _siTop, _siLeft, _siWidth, _siHeight)\n", | |
| " sec_num = seriesImg['section_number']\n", | |
| " \n", | |
| " imgstr = '''<div style=\"float:left; height:140px;\"><div>Section number: <strong>%d</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='%s'/></div>''' % (sec_num, thumbnail)\n", | |
| " gallery_str += imgstr\n", | |
| " \n", | |
| " return gallery_str\n", | |
| "\n", | |
| "galleryStr = generateGalleryString(seriesImageData[0]['section_images'])\n", | |
| "HTML(galleryStr)" | |
| ], | |
| "language": "python", | |
| "metadata": {}, | |
| "outputs": [ | |
| { | |
| "html": [ | |
| "<div style=\"float:left; height:140px;\"><div>Section number: <strong>2</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400111732/0400111732.aff/TileGroup/0-0-0.jpg?siTop=2176&siLeft=256&siWidth=16320&siHeight=14016'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>32</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400111732/0400111732.aff/TileGroup/0-0-0.jpg?siTop=1552&siLeft=20160&siWidth=18640&siHeight=15168'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>62</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400111171/0400111171.aff/TileGroup/0-0-0.jpg?siTop=1984&siLeft=704&siWidth=20480&siHeight=15872'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>92</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400111171/0400111171.aff/TileGroup/0-0-0.jpg?siTop=1600&siLeft=22848&siWidth=21120&siHeight=16256'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>122</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400108581/0400108581.aff/TileGroup/0-0-0.jpg?siTop=1520&siLeft=0&siWidth=20784&siHeight=15392'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>152</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400108581/0400108581.aff/TileGroup/0-0-0.jpg?siTop=2160&siLeft=24064&siWidth=20880&siHeight=14768'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>182</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400106341/0400106341.aff/TileGroup/0-0-0.jpg?siTop=832&siLeft=0&siWidth=22384&siHeight=14896'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>212</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400106341/0400106341.aff/TileGroup/0-0-0.jpg?siTop=1056&siLeft=26400&siWidth=22320&siHeight=13952'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>242</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400114073/0400114073.aff/TileGroup/0-0-0.jpg?siTop=1888&siLeft=0&siWidth=21696&siHeight=13472'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>272</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400114073/0400114073.aff/TileGroup/0-0-0.jpg?siTop=832&siLeft=26496&siWidth=23104&siHeight=13952'/></div>" | |
| ], | |
| "output_type": "pyout", | |
| "prompt_number": 248, | |
| "text": [ | |
| "<IPython.core.display.HTML at 0x2e14e50>" | |
| ] | |
| } | |
| ], | |
| "prompt_number": 248 | |
| }, | |
| { | |
| "cell_type": "code", | |
| "collapsed": false, | |
| "input": [ | |
| "def generateGalleryForID(series_id):\n", | |
| " \n", | |
| " requestURL = API_listOfImages % series_id\n", | |
| " seriesImageData = requests.get(requestURL).json()['msg']\n", | |
| " galleryString = generateGalleryString(seriesImageData[0]['section_images'])\n", | |
| " return galleryString\n", | |
| "\n", | |
| "# generating galleries for each image\n", | |
| "\n", | |
| "html_str = ''\n", | |
| "\n", | |
| "for ds in datasets:\n", | |
| " if ds['treatments'][0]['tags'] == 'histology':\n", | |
| " headerStr = '<h4 style=\"width:100%%; float:left;\">%d - HIS: %s</h4>' % (ds['id'], ds['treatments'][0]['name'])\n", | |
| " gallerystr = generateGalleryForID(ds['id']) \n", | |
| "\n", | |
| " html_str += headerStr\n", | |
| " \n", | |
| " html_str += gallerystr\n", | |
| " html_str += '<br><br><br>'\n", | |
| " \n", | |
| " elif ds['treatments'][0]['tags'] == 'In Situ Hybridization histology':\n", | |
| " for gene in ds['genes']:\n", | |
| " headerStr = '<h4 style=\"width:100%%; float:left;\">%d - ISH: %s - %s</h4>' % (ds['id'], gene['acronym'], gene['name']) \n", | |
| "\n", | |
| " gallerystr = generateGalleryForID(ds['id']) \n", | |
| "\n", | |
| " html_str += headerStr\n", | |
| " html_str += gallerystr\n", | |
| " html_str += '<br><br><br>'\n", | |
| " \n", | |
| " \n", | |
| "HTML(html_str)" | |
| ], | |
| "language": "python", | |
| "metadata": {}, | |
| "outputs": [ | |
| { | |
| "html": [ | |
| "<h4 style=\"width:100%; float:left;\">100110258 - ISH: CALB1 - calbindin 1, 28kDa</h4><div style=\"float:left; height:140px;\"><div>Section number: <strong>2</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400111732/0400111732.aff/TileGroup/0-0-0.jpg?siTop=2176&siLeft=256&siWidth=16320&siHeight=14016'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>32</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400111732/0400111732.aff/TileGroup/0-0-0.jpg?siTop=1552&siLeft=20160&siWidth=18640&siHeight=15168'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>62</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400111171/0400111171.aff/TileGroup/0-0-0.jpg?siTop=1984&siLeft=704&siWidth=20480&siHeight=15872'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>92</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400111171/0400111171.aff/TileGroup/0-0-0.jpg?siTop=1600&siLeft=22848&siWidth=21120&siHeight=16256'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>122</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400108581/0400108581.aff/TileGroup/0-0-0.jpg?siTop=1520&siLeft=0&siWidth=20784&siHeight=15392'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>152</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400108581/0400108581.aff/TileGroup/0-0-0.jpg?siTop=2160&siLeft=24064&siWidth=20880&siHeight=14768'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>182</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400106341/0400106341.aff/TileGroup/0-0-0.jpg?siTop=832&siLeft=0&siWidth=22384&siHeight=14896'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>212</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400106341/0400106341.aff/TileGroup/0-0-0.jpg?siTop=1056&siLeft=26400&siWidth=22320&siHeight=13952'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>242</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400114073/0400114073.aff/TileGroup/0-0-0.jpg?siTop=1888&siLeft=0&siWidth=21696&siHeight=13472'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>272</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400114073/0400114073.aff/TileGroup/0-0-0.jpg?siTop=832&siLeft=26496&siWidth=23104&siHeight=13952'/></div><br><br><br><h4 style=\"width:100%; float:left;\">100109902 - ISH: PDE1A - phosphodiesterase 1A, calmodulin-dependent</h4><div style=\"float:left; height:140px;\"><div>Section number: <strong>4</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400112020/0400112020.aff/TileGroup/0-0-0.jpg?siTop=816&siLeft=21664&siWidth=18352&siHeight=14480'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>34</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400112020/0400112020.aff/TileGroup/0-0-0.jpg?siTop=2848&siLeft=1088&siWidth=15584&siHeight=12848'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>64</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400111459/0400111459.aff/TileGroup/0-0-0.jpg?siTop=1728&siLeft=23552&siWidth=20928&siHeight=16064'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>94</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400111459/0400111459.aff/TileGroup/0-0-0.jpg?siTop=2096&siLeft=256&siWidth=19904&siHeight=14992'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>124</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400108869/0400108869.aff/TileGroup/0-0-0.jpg?siTop=1856&siLeft=22464&siWidth=27328&siHeight=16256'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>154</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400108869/0400108869.aff/TileGroup/0-0-0.jpg?siTop=2112&siLeft=64&siWidth=19712&siHeight=15744'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>184</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400106629/0400106629.aff/TileGroup/0-0-0.jpg?siTop=704&siLeft=22208&siWidth=24384&siHeight=15232'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>214</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400106629/0400106629.aff/TileGroup/0-0-0.jpg?siTop=1024&siLeft=0&siWidth=20608&siHeight=13440'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>244</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400105319/0400105319.aff/TileGroup/0-0-0.jpg?siTop=832&siLeft=24832&siWidth=22080&siHeight=14912'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>274</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400105319/0400105319.aff/TileGroup/0-0-0.jpg?siTop=0&siLeft=0&siWidth=21104&siHeight=15616'/></div><br><br><br><h4 style=\"width:100%; float:left;\">100108592 - HIS: NISSL</h4><div style=\"float:left; height:140px;\"><div>Section number: <strong>15</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400113604/0400113604.aff/TileGroup/0-0-0.jpg?siTop=1216&siLeft=368&siWidth=17456&siHeight=13536'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>30</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400110883/0400110883.aff/TileGroup/0-0-0.jpg?siTop=2016&siLeft=688&siWidth=18160&siHeight=14352'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>45</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400113604/0400113604.aff/TileGroup/0-0-0.jpg?siTop=0&siLeft=23232&siWidth=19280&siHeight=14384'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>60</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400110883/0400110883.aff/TileGroup/0-0-0.jpg?siTop=1888&siLeft=23888&siWidth=18896&siHeight=15056'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>75</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400109973/0400109973.aff/TileGroup/0-0-0.jpg?siTop=2144&siLeft=0&siWidth=19936&siHeight=15168'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>90</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400108293/0400108293.aff/TileGroup/0-0-0.jpg?siTop=1472&siLeft=400&siWidth=20176&siHeight=15248'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>105</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400109973/0400109973.aff/TileGroup/0-0-0.jpg?siTop=544&siLeft=23520&siWidth=21312&siHeight=15184'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>120</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400108293/0400108293.aff/TileGroup/0-0-0.jpg?siTop=2544&siLeft=25344&siWidth=21424&siHeight=15280'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>135</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400120125/0400120125.aff/TileGroup/0-0-0.jpg?siTop=1952&siLeft=32&siWidth=21616&siHeight=15408'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>150</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400106053/0400106053.aff/TileGroup/0-0-0.jpg?siTop=1104&siLeft=560&siWidth=21520&siHeight=15200'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>165</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400120125/0400120125.aff/TileGroup/0-0-0.jpg?siTop=2288&siLeft=24240&siWidth=22368&siHeight=15040'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>180</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400106053/0400106053.aff/TileGroup/0-0-0.jpg?siTop=1584&siLeft=25264&siWidth=22880&siHeight=14928'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>195</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400111625/0400111625.aff/TileGroup/0-0-0.jpg?siTop=1856&siLeft=256&siWidth=22144&siHeight=14976'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>210</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400113785/0400113785.aff/TileGroup/0-0-0.jpg?siTop=1728&siLeft=0&siWidth=21760&siHeight=14736'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>225</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400111625/0400111625.aff/TileGroup/0-0-0.jpg?siTop=1776&siLeft=26032&siWidth=23584&siHeight=14368'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>240</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400113785/0400113785.aff/TileGroup/0-0-0.jpg?siTop=3968&siLeft=24208&siWidth=22880&siHeight=13344'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>255</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400106903/0400106903.aff/TileGroup/0-0-0.jpg?siTop=0&siLeft=896&siWidth=21760&siHeight=14464'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>270</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400109031/0400109031.aff/TileGroup/0-0-0.jpg?siTop=64&siLeft=832&siWidth=21184&siHeight=14400'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>285</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400106903/0400106903.aff/TileGroup/0-0-0.jpg?siTop=1248&siLeft=27664&siWidth=22752&siHeight=12288'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>300</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400109031/0400109031.aff/TileGroup/0-0-0.jpg?siTop=3264&siLeft=26304&siWidth=22272&siHeight=12096'/></div><br><br><br><h4 style=\"width:100%; float:left;\">100109829 - ISH: RORB - RAR-related orphan receptor B</h4><div style=\"float:left; height:140px;\"><div>Section number: <strong>1</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400111588/0400111588.aff/TileGroup/0-0-0.jpg?siTop=288&siLeft=18112&siWidth=18847&siHeight=15648'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>31</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400111588/0400111588.aff/TileGroup/0-0-0.jpg?siTop=1248&siLeft=1056&siWidth=15776&siHeight=14112'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>61</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400111027/0400111027.aff/TileGroup/0-0-0.jpg?siTop=0&siLeft=20352&siWidth=22528&siHeight=17728'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>91</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400111027/0400111027.aff/TileGroup/0-0-0.jpg?siTop=1152&siLeft=64&siWidth=19712&siHeight=15488'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>121</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400108437/0400108437.aff/TileGroup/0-0-0.jpg?siTop=912&siLeft=21776&siWidth=21360&siHeight=16192'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>151</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400108437/0400108437.aff/TileGroup/0-0-0.jpg?siTop=1760&siLeft=0&siWidth=19728&siHeight=15056'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>181</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400106197/0400106197.aff/TileGroup/0-0-0.jpg?siTop=896&siLeft=22400&siWidth=23424&siHeight=15232'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>211</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400106197/0400106197.aff/TileGroup/0-0-0.jpg?siTop=672&siLeft=192&siWidth=21104&siHeight=14864'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>241</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400113929/0400113929.aff/TileGroup/0-0-0.jpg?siTop=1088&siLeft=21696&siWidth=24704&siHeight=16576'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>271</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400113929/0400113929.aff/TileGroup/0-0-0.jpg?siTop=2624&siLeft=0&siWidth=20416&siHeight=15296'/></div><br><br><br><h4 style=\"width:100%; float:left;\">100110202 - ISH: PCP4 - Purkinje cell protein 4</h4><div style=\"float:left; height:140px;\"><div>Section number: <strong>3</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400111876/0400111876.aff/TileGroup/0-0-0.jpg?siTop=1920&siLeft=576&siWidth=16640&siHeight=13184'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>33</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400111876/0400111876.aff/TileGroup/0-0-0.jpg?siTop=320&siLeft=19200&siWidth=18624&siHeight=14848'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>63</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400111315/0400111315.aff/TileGroup/0-0-0.jpg?siTop=192&siLeft=0&siWidth=20288&siHeight=15360'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>93</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400111315/0400111315.aff/TileGroup/0-0-0.jpg?siTop=64&siLeft=21888&siWidth=22528&siHeight=15680'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>123</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400108725/0400108725.aff/TileGroup/0-0-0.jpg?siTop=384&siLeft=128&siWidth=21440&siHeight=16768'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>153</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400108725/0400108725.aff/TileGroup/0-0-0.jpg?siTop=448&siLeft=22976&siWidth=24128&siHeight=16896'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>183</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400106485/0400106485.aff/TileGroup/0-0-0.jpg?siTop=1408&siLeft=384&siWidth=22336&siHeight=15808'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>213</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400106485/0400106485.aff/TileGroup/0-0-0.jpg?siTop=0&siLeft=26880&siWidth=21312&siHeight=16512'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>243</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400105175/0400105175.aff/TileGroup/0-0-0.jpg?siTop=3584&siLeft=0&siWidth=21696&siHeight=16192'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>273</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400105175/0400105175.aff/TileGroup/0-0-0.jpg?siTop=4352&siLeft=24128&siWidth=24512&siHeight=14720'/></div><br><br><br><h4 style=\"width:100%; float:left;\">100109773 - ISH: NEFL - neurofilament, light polypeptide</h4><div style=\"float:left; height:140px;\"><div>Section number: <strong>5</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400112164/0400112164.aff/TileGroup/0-0-0.jpg?siTop=64&siLeft=22272&siWidth=19968&siHeight=15040'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>35</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400112164/0400112164.aff/TileGroup/0-0-0.jpg?siTop=896&siLeft=1472&siWidth=17280&siHeight=13568'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>65</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400108533/0400108533.aff/TileGroup/0-0-0.jpg?siTop=640&siLeft=23040&siWidth=22080&siHeight=16192'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>95</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400108533/0400108533.aff/TileGroup/0-0-0.jpg?siTop=1280&siLeft=320&siWidth=20928&siHeight=16127'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>125</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400109013/0400109013.aff/TileGroup/0-0-0.jpg?siTop=1088&siLeft=24576&siWidth=22912&siHeight=16128'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>155</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400109013/0400109013.aff/TileGroup/0-0-0.jpg?siTop=2432&siLeft=192&siWidth=22272&siHeight=15359'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>185</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400106773/0400106773.aff/TileGroup/0-0-0.jpg?siTop=960&siLeft=24512&siWidth=23808&siHeight=16320'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>215</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400106773/0400106773.aff/TileGroup/0-0-0.jpg?siTop=64&siLeft=0&siWidth=21696&siHeight=16512'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>245</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400105463/0400105463.aff/TileGroup/0-0-0.jpg?siTop=0&siLeft=22976&siWidth=24192&siHeight=16000'/></div><div style=\"float:left; height:140px;\"><div>Section number: <strong>275</strong></div><img style=\"border:1px solid #333; margin:5px; width:128px;\" src='http://human.brain-map.org/tiles///external/aibssan/production31/prod2/0400105463/0400105463.aff/TileGroup/0-0-0.jpg?siTop=192&siLeft=64&siWidth=21568&siHeight=15424'/></div><br><br><br>" | |
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