Created
July 22, 2014 19:36
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homebrew blast failure
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| tamias:trillian giles$ brew --config | |
| HOMEBREW_VERSION: 0.9.5 | |
| ORIGIN: https://github.com/Homebrew/homebrew.git | |
| HEAD: b79beee13bf2e0118e9d997cbc026a6a553c6953 | |
| HOMEBREW_PREFIX: /usr/local | |
| HOMEBREW_CELLAR: /usr/local/Cellar | |
| CPU: 8-core 64-bit ivybridge | |
| OS X: 10.8.5-x86_64 | |
| Xcode: 5.1.1 | |
| CLT: 5.1.0.0.1.1396320587 | |
| Clang: 5.1 build 503 | |
| X11: N/A | |
| System Ruby: 1.8.7-358 | |
| Perl: /usr/bin/perl | |
| Python: /usr/local/bin/python => /usr/local/Cellar/python/2.7.8/Frameworks/Python.framework/Versions/2.7/bin/python2.7 | |
| Ruby: /usr/bin/ruby => /System/Library/Frameworks/Ruby.framework/Versions/1.8/usr/bin/ruby | |
| tamias:trillian giles$ brew doctor | |
| Your system is ready to brew. | |
| tamias:trillian giles$ brew install -v blast 2>&1 | |
| ==> Downloading ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.29/ncbi-blast-2.2.29+-src.tar.gz | |
| Already downloaded: /Library/Caches/Homebrew/blast-2.2.29.tar.gz | |
| ==> Verifying blast-2.2.29.tar.gz checksum | |
| tar xf /Library/Caches/Homebrew/blast-2.2.29.tar.gz | |
| ==> ./configure --prefix=/usr/local/Cellar/blast/2.2.29 --without-debug --with-mt --without-freetype --without-gnutls --with-jpeg=/usr/local/opt/jpeg --with-png=/usr/local/opt/libpng --with-pcre=/usr/local/opt/pcre --with-check | |
| configure: loading site script /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/build-system/config.site | |
| configure: creating cache config.cache | |
| checking build system type... x86_64-apple-darwin12.5.0 | |
| checking host system type... x86_64-apple-darwin12.5.0 | |
| checking for a BSD-compatible install... /usr/bin/install -c | |
| checking for gcc... gcc-4.9 | |
| checking for C compiler default output file name... a.out | |
| checking whether the C compiler works... yes | |
| checking whether we are cross compiling... no | |
| checking for suffix of executables... | |
| checking for suffix of object files... o | |
| checking whether we are using the GNU C compiler... yes | |
| checking whether gcc-4.9 accepts -g... yes | |
| checking for gcc-4.9 option to accept ANSI C... none needed | |
| checking whether we are using the GNU C++ compiler... yes | |
| checking whether g++-4.9 accepts -g... yes | |
| adjusted C compiler: /usr/local/Library/ENV/4.3/gcc-4.9 | |
| adjusted C++ compiler: /usr/local/Library/ENV/4.3/g++-4.9 | |
| Using built-in specs. | |
| COLLECT_GCC=/usr/local/opt/gcc/bin/gcc-4.9 | |
| COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/4.9.1/libexec/gcc/x86_64-apple-darwin12.5.0/4.9.1/lto-wrapper | |
| Target: x86_64-apple-darwin12.5.0 | |
| Configured with: ../configure --build=x86_64-apple-darwin12.5.0 --prefix=/usr/local/Cellar/gcc/4.9.1 --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-4.9 --with-gmp=/usr/local/opt/gmp --with-mpfr=/usr/local/opt/mpfr --with-mpc=/usr/local/opt/libmpc --with-cloog=/usr/local/opt/cloog --with-isl=/usr/local/opt/isl --with-system-zlib --enable-version-specific-runtime-libs --enable-libstdcxx-time=yes --enable-stage1-checking --enable-checking=release --enable-lto --disable-werror --with-pkgversion='Homebrew gcc 4.9.1' --with-bugurl=https://github.com/Homebrew/homebrew/issues --enable-plugin --disable-nls --enable-multilib | |
| Thread model: posix | |
| gcc version 4.9.1 (Homebrew gcc 4.9.1) | |
| checking whether /usr/local/Library/ENV/4.3/gcc-4.9 supports -Wl,-rpath... yes | |
| checking how to enable C++ '11 features in /usr/local/Library/ENV/4.3/g++-4.9 ... -std=gnu++11 | |
| checking how to enable C '11 or at least '99 features in /usr/local/Library/ENV/4.3/gcc-4.9 ... -std=gnu11 -fgnu89-inline | |
| checking whether this system supports --with(out)-64... yes | |
| checking whether ln -s works... yes | |
| checking for ranlib... ranlib | |
| checking for ar... ar cr | |
| checking ranlib's effectiveness... neutral | |
| checking for strip... strip | |
| checking whether strip loses runtime type information... no | |
| checking for ccache... no | |
| checking for tail... /usr/bin/tail | |
| checking whether /usr/bin/tail accepts modern syntax (-n N)... yes | |
| checking for touch... /usr/bin/touch | |
| checking for grep... /usr/bin/grep | |
| checking for egrep... grep -E | |
| checking how to run grep -E quietly... grep -E -q | |
| checking for valgrind... no | |
| checking for ldd... no | |
| checking how to run the C++ preprocessor... /usr/local/Library/ENV/4.3/g++-4.9 -std=gnu++11 -E | |
| checking for ANSI C header files... yes | |
| checking for sys/types.h... yes | |
| checking for sys/stat.h... yes | |
| checking for stdlib.h... yes | |
| checking for string.h... yes | |
| checking for memory.h... yes | |
| checking for strings.h... yes | |
| checking for inttypes.h... yes | |
| checking for stdint.h... yes | |
| checking for unistd.h... yes | |
| checking for size_t... yes | |
| checking for size_t... (cached) yes | |
| checking size of size_t... 8 | |
| checking for amq... no | |
| checking whether /usr/local/Library/ENV/4.3/gcc-4.9 -std=gnu11 -fgnu89-inline supports -Wl,--no-allow-shlib-undefined... no | |
| checking how to run the C preprocessor... /usr/local/Library/ENV/4.3/gcc-4.9 -std=gnu11 -fgnu89-inline -E | |
| checking whether cross-directory hard links work... yes | |
| checking iostream usability... yes | |
| checking iostream presence... yes | |
| checking for iostream... yes | |
| checking iostream.h usability... no | |
| checking iostream.h presence... no | |
| checking for iostream.h... no | |
| checking fstream usability... yes | |
| checking fstream presence... yes | |
| checking for fstream... yes | |
| checking fstream.h usability... no | |
| checking fstream.h presence... no | |
| checking for fstream.h... no | |
| checking strstream usability... yes | |
| checking strstream presence... yes | |
| checking for strstream... yes | |
| checking strstream.h usability... no | |
| checking strstream.h presence... no | |
| checking for strstream.h... no | |
| checking strstrea.h usability... no | |
| checking strstrea.h presence... no | |
| checking for strstrea.h... no | |
| checking for inttypes.h... (cached) yes | |
| checking limits usability... yes | |
| checking limits presence... yes | |
| checking for limits... yes | |
| checking for unistd.h... (cached) yes | |
| checking windows.h usability... no | |
| checking windows.h presence... no | |
| checking for windows.h... no | |
| checking for wstring... yes | |
| checking for socklen_t... yes | |
| checking atomic.h usability... no | |
| checking atomic.h presence... no | |
| checking for atomic.h... no | |
| checking dlfcn.h usability... yes | |
| checking dlfcn.h presence... yes | |
| checking for dlfcn.h... yes | |
| checking ieeefp.h usability... no | |
| checking ieeefp.h presence... no | |
| checking for ieeefp.h... no | |
| checking poll.h usability... yes | |
| checking poll.h presence... yes | |
| checking for poll.h... yes | |
| checking sys/epoll.h usability... no | |
| checking sys/epoll.h presence... no | |
| checking for sys/epoll.h... no | |
| checking sys/mount.h usability... yes | |
| checking sys/mount.h presence... yes | |
| checking for sys/mount.h... yes | |
| checking sys/sockio.h usability... yes | |
| checking sys/sockio.h presence... yes | |
| checking for sys/sockio.h... yes | |
| checking sys/statvfs.h usability... yes | |
| checking sys/statvfs.h presence... yes | |
| checking for sys/statvfs.h... yes | |
| checking sys/sysinfo.h usability... no | |
| checking sys/sysinfo.h presence... no | |
| checking for sys/sysinfo.h... no | |
| checking sys/vfs.h usability... no | |
| checking sys/vfs.h presence... no | |
| checking for sys/vfs.h... no | |
| checking arpa/inet.h usability... yes | |
| checking arpa/inet.h presence... yes | |
| checking for arpa/inet.h... yes | |
| checking errno.h usability... yes | |
| checking errno.h presence... yes | |
| checking for errno.h... yes | |
| checking malloc.h usability... no | |
| checking malloc.h presence... no | |
| checking for malloc.h... no | |
| checking netdb.h usability... yes | |
| checking netdb.h presence... yes | |
| checking for netdb.h... yes | |
| checking netinet/in.h usability... yes | |
| checking netinet/in.h presence... yes | |
| checking for netinet/in.h... yes | |
| checking netinet/tcp.h usability... yes | |
| checking netinet/tcp.h presence... yes | |
| checking for netinet/tcp.h... yes | |
| checking paths.h usability... yes | |
| checking paths.h presence... yes | |
| checking for paths.h... yes | |
| checking signal.h usability... yes | |
| checking signal.h presence... yes | |
| checking for signal.h... yes | |
| checking sys/ioctl.h usability... yes | |
| checking sys/ioctl.h presence... yes | |
| checking for sys/ioctl.h... yes | |
| checking sys/select.h usability... yes | |
| checking sys/select.h presence... yes | |
| checking for sys/select.h... yes | |
| checking sys/socket.h usability... yes | |
| checking sys/socket.h presence... yes | |
| checking for sys/socket.h... yes | |
| checking sys/time.h usability... yes | |
| checking sys/time.h presence... yes | |
| checking for sys/time.h... yes | |
| checking wchar.h usability... yes | |
| checking wchar.h presence... yes | |
| checking for wchar.h... yes | |
| checking whether time.h and sys/time.h may both be included... yes | |
| checking for gethostbyname_r... no | |
| checking for gethostbyaddr_r... no | |
| checking for getservbyname_r... no | |
| checking for getpwuid_r... 5 | |
| checking for getlogin_r... yes | |
| checking for localtime_r... yes | |
| checking for pthread_setconcurrency... yes | |
| checking for pthread_atfork... yes | |
| checking return type of localtime_r... struct | |
| checking whether pthread mutexes are available... yes | |
| checking for vprintf... yes | |
| checking for _doprnt... no | |
| checking for euidaccess... no | |
| checking for atoll... yes | |
| checking for basename... yes | |
| checking for lchown... yes | |
| checking for fseeko... yes | |
| checking for getgrouplist... yes | |
| checking for getpagesize... yes | |
| checking for getpass... yes | |
| checking for getpassphrase... no | |
| checking for getpwuid... yes | |
| checking for getrusage... yes | |
| checking for gettimeofday... yes | |
| checking for getuid... yes | |
| checking for memrchr... no | |
| checking for readpassphrase... yes | |
| checking for readv... yes | |
| checking for usleep... yes | |
| checking for asprintf... yes | |
| checking for vasprintf... yes | |
| checking for vsnprintf... yes | |
| checking for select... yes | |
| checking for statfs... yes | |
| checking for statvfs... yes | |
| checking for strcasecmp... yes | |
| checking for strlcat... yes | |
| checking for strlcpy... yes | |
| checking for strdup... yes | |
| checking for strndup... yes | |
| checking for strtok_r... yes | |
| checking for sysmp... no | |
| checking for timegm... yes | |
| checking for utimes... yes | |
| checking for lutimes... yes | |
| checking for writev... yes | |
| checking return type of signal handlers... void | |
| checking whether select updates the timeout when interrupted... no | |
| checking whether strcasecmp treats letters as lowercase... yes | |
| checking for Linux-like sysinfo with 1 arg... no | |
| checking for getloadavg... yes | |
| checking for readdir_r... 3 | |
| checking for an ANSI C-conforming const... yes | |
| checking whether byte ordering is bigendian... no | |
| checking whether char is unsigned... no | |
| checking for char... yes | |
| checking size of char... 1 | |
| checking for double... yes | |
| checking size of double... 8 | |
| checking for float... yes | |
| checking size of float... 4 | |
| checking for int... yes | |
| checking size of int... 4 | |
| checking for long... yes | |
| checking size of long... 8 | |
| checking for long double... yes | |
| checking size of long double... 16 | |
| checking for long long... yes | |
| checking size of long long... 8 | |
| checking for short... yes | |
| checking size of short... 2 | |
| checking for void*... yes | |
| checking size of void*... 8 | |
| checking for __int64... no | |
| checking size of __int64... 0 | |
| checking for intptr_t... yes | |
| checking for uintptr_t... yes | |
| checking for struct sockaddr_in.sin_len... yes | |
| checking for struct tm.tm_zone... yes | |
| checking for struct tm.__tm_zone... no | |
| checking whether function prototypes can use throw(...)... yes | |
| checking for obsolete string::compare() syntax... no | |
| checking whether the auto_ptr template class works... yes | |
| checking for min/max templates... yes | |
| checking whether new C++ streams have ios_base::... yes | |
| checking for ios(_base)::register_callback... yes | |
| checking for std::char_traits::... yes | |
| checking for SysV semaphores... yes | |
| checking for union semun... yes | |
| checking which way the stack grows... up | |
| checking whether the preprocessor supports C99-style variadic macros... yes | |
| checking whether the preprocessor supports GNU-style variadic macros... yes | |
| checking syntax for marking deprecated functions... __attribute__((__deprecated__)) | |
| checking how to force inlining... inline __attribute__((always_inline)) | |
| checking whether the C compiler supports __attribute__((destructor))... yes | |
| checking whether /usr/local/Library/ENV/4.3/gcc-4.9 -std=gnu11 -fgnu89-inline supports __attribute__((visibility("default")))... (cached) unnecessary | |
| checking whether the C compiler supports C99 restrict... __restrict__ | |
| checking whether the C++ compiler supports C99 restrict... __restrict__ | |
| checking syntax for marking functions that never return... __attribute__((__noreturn__)) | |
| checking syntax for declaring thread-local variables... __thread | |
| checking whether FIONBIO requires BSD_COMP to be defined... no | |
| checking whether INADDR_NONE is defined... yes | |
| checking whether unaligned reads are permissible... yes | |
| checking whether in-house NCBI resources are available... no | |
| checking for gethostbyname in -lnsl... no | |
| checking for connect in -lsocket... no | |
| checking for res_search in -lresolv... yes | |
| checking for inet_ntoa_r... no | |
| checking for getaddrinfo... yes | |
| checking for getnameinfo... yes | |
| checking for freehostent... yes | |
| checking for gethostent_r... no | |
| checking for getipnodebyaddr... yes | |
| checking for getipnodebyname... yes | |
| checking for inet_ntop... yes | |
| checking for erf... yes | |
| checking for library containing kstat_open... no | |
| checking for library containing rstat... no | |
| checking for library containing setkey... none required | |
| checking for library containing dlopen... none required | |
| checking for library containing uuid_generate... none required | |
| checking for library containing fuse_loop... no | |
| checking for library containing clock_gettime... no | |
| checking for library containing cplus_demangle... no | |
| checking for nanosleep... yes | |
| checking for sched_yield... yes | |
| checking for library containing iconv... (cached) -liconv | |
| checking for iconv declaration... | |
| extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); | |
| checking for libz... yes | |
| checking for libbz2... yes | |
| checking for liblzo2... no | |
| checking for libpcre in /usr/local/opt/pcre... yes | |
| checking for libgcrypt-config... no | |
| checking for libgcrypt... no | |
| checking for libgnutls-config... (cached) no | |
| checking for libssl... yes | |
| checking for krb5-config... /usr/bin/krb5-config | |
| checking for libgssapi_krb5... yes | |
| checking for libcurl... yes | |
| checking for reentrant Sybase libraries... no | |
| checking for Sybase... no | |
| checking for FreeTDS... no | |
| checking for mysql_config... no | |
| checking for Berkeley DB libraries... no | |
| checking for python... /usr/local/opt/python/bin/python | |
| checking for usable Python 2.7 libraries... yes | |
| checking for python2.3... no | |
| checking for python2.4... no | |
| checking for python2.5... /usr/bin/python2.5 | |
| checking for usable Python 2.5 libraries... yes | |
| checking for perl... /usr/bin/perl | |
| checking for usable Perl libraries... yes | |
| usage: basename string [suffix] | |
| basename [-a] [-s suffix] string [...] | |
| checking Boost version... 1_55 | |
| configure: WARNING: Untested Boost version; may prove incompatible. | |
| configure: WARNING: If so, please re-run this script with the flag --without-boost. | |
| checking for Boost library name tag... -xgcc49-mt-1_55-64 (autodetected) | |
| checking for Boost.Regex... no | |
| checking for Boost.Spirit... yes | |
| checking for Boost.System... no | |
| checking for Boost.Filesystem... no | |
| checking for Boost.Test... included-only | |
| checking for Boost.Threads... no | |
| checking for the NCBI C toolkit... no | |
| checking for X... disabled | |
| checking for XextCreateExtension in -lXext... no | |
| checking for XtMainLoop in -lXt... no | |
| checking for XmuMakeAtom in -lXmu... no | |
| checking for OpenGL... yes | |
| checking for OSMesaCreateContext in -lOSMesa... no | |
| checking for glutInit in -lglut... no | |
| checking for library containing glewGetExtension... no | |
| checking for wx-config... no | |
| checking for wxWidgets... no | |
| checking for FastCGI libraries... no | |
| checking for FCGX_Accept_r... no | |
| checking for NCBI SSS directories in /sss/BUILD... no | |
| checking for SP directories... no | |
| checking for ORBacus... no | |
| checking for ICU... no | |
| checking for libexpat... yes | |
| checking for libsablot... no | |
| checking for libxml2... yes | |
| checking for libxslt... yes | |
| checking for xsltproc... /usr/bin/xsltproc | |
| checking for libexslt... yes | |
| checking for Xerces-C++... no | |
| checking for Xalan-C++... no | |
| checking for Zorba... no | |
| checking for libsqlite3... yes | |
| checking sqlite3async.h usability... no | |
| checking sqlite3async.h presence... no | |
| checking for sqlite3async.h... no | |
| checking for sqlite3_unlock_notify... no | |
| checking for liboechem... no | |
| checking for libdrmaa... no | |
| checking for libmuparser... no | |
| checking for libhdf5_cpp... no | |
| checking for libjpeg in /usr/local/opt/jpeg... yes | |
| checking for libpng in /usr/local/opt/libpng... yes | |
| checking for libtiff... yes | |
| checking for libungif... no | |
| checking for libgif... no | |
| checking for libXpm... no | |
| checking for libftgl... no | |
| checking for libmagic... no | |
| checking for libmimetic... no | |
| checking for soapcpp2... no | |
| checking for wsdl2h... no | |
| checking for libgsoapssl++... no | |
| checking for libmongoclient... no | |
| configure: looking for configurables below /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++... | |
| configure: ...done | |
| updating cache config.cache | |
| configure: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/status/config.status | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/algo/blast/api/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/algo/blast/blastinput/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/algo/blast/blastinput/unit_test/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/algo/blast/composition_adjustment/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/algo/blast/core/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/algo/blast/dbindex/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/algo/blast/dbindex/makeindex/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/algo/blast/format/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/algo/blast/igblast/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/algo/blast/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/algo/blast/unit_tests/api/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blast_format/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/algo/blast/unit_tests/blastdb/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/algo/blast/unit_tests/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/algo/blast/unit_tests/seqdb_reader/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/algo/dustmask/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/algo/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/algo/segmask/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/algo/winmask/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/app/blast/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/app/blastdb/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/app/dustmasker/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/app/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/app/segmasker/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/app/winmasker/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/check.cfg | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/config.h | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/install.sh | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/Makefile.app | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/Makefile.app.tmpl | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/Makefile.both | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/Makefile.dll | |
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| config.status: executing default commands | |
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| Prebuilt project_tree_builder not found | |
| =============================================================================== | |
| NCBI C++ Toolkit documentation: doc/index.html, doc/config.html#ref_Running | |
| For the available configuration flags run: ./configure --help | |
| CFLAGS = -Wall -Wno-format-y2k -m64 -fopenmp -O2 -fno-common | |
| CXXFLAGS = -Wall -Wno-format-y2k -m64 -fopenmp -O2 -fno-common | |
| CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -D_MT -D_REENTRANT -D_THREAD_SAFE | |
| LDFLAGS = -Wl,-rpath,/usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1 -m64 -Wl,-flat_namespace -fopenmp -dylib_file /usr/local/Cellar/blast/2.2.29/lib/libdbapi_driver.dylib:$(libdir)/libdbapi_driver.dylib -dylib_file /usr/local/Cellar/blast/2.2.29/lib/libgui_utils.dylib:$(libdir)/libgui_utils.dylib -dylib_file /usr/local/Cellar/blast/2.2.29/lib/libncbi_xloader_genbank.dylib:$(libdir)/libncbi_xloader_genbank.dylib -dylib_file /usr/local/Cellar/blast/2.2.29/lib/libncbi_xreader.dylib:$(libdir)/libncbi_xreader.dylib -dylib_file /usr/local/Cellar/blast/2.2.29/lib/libncbi_xreader_id1.dylib:$(libdir)/libncbi_xreader_id1.dylib -dylib_file /usr/local/Cellar/blast/2.2.29/lib/libncbi_xreader_pubseqos.dylib:$(libdir)/libncbi_xreader_pubseqos.dylib -O | |
| LIBRARIES: build as static by default | |
| FEATURES: GCC MT LFS DLL unix WinMain Darwin check | |
| PACKAGES: | |
| enabled: UUID Z BZ2 PCRE OPENSSL KRB5 CURL PYTHON PYTHON25 PERL Boost.Spirit Boost.Test.Included OpenGL EXPAT LIBXML LIBXSLT LIBEXSLT SQLITE3 JPEG PNG TIFF | |
| disabled: FUSE LocalZ LocalBZ2 LZO LocalPCRE GCRYPT GNUTLS Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON23 PYTHON24 Boost.Filesystem Boost.Regex Boost.System Boost.Test Boost.Threads C-Toolkit MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU SABLOT Xerces Xalan Zorba SQLITE3ASYNC OECHEM SGE MUPARSER HDF5 UNGIF GIF XPM FreeType FTGL MAGIC MIMETIC GSOAP MONGODB | |
| PROJECTS: | |
| enabled: cgi local_lbsm connext ncbi_crypt serial objects dbapi app algo | |
| disabled: bdb ctools gui gbench | |
| Tools / flags / paths: /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/Makefile.mk | |
| Configuration header: /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/inc/ncbiconf_unix.h | |
| To build everything: cd /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build && make all_r | |
| or simply run make in the current directory | |
| ******* CONFIGURATION SUCCESSFUL ******* | |
| ==> make | |
| if test -f /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/Makefile.flat; then \ | |
| cd /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build && /usr/bin/make -f Makefile.flat; \ | |
| elif test -s ""; then \ | |
| cd /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build && /usr/bin/make - --jobserver-fds=3,5 -j all_p; \ | |
| else \ | |
| cd /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build && /usr/bin/make - --jobserver-fds=3,5 -j all_r; \ | |
| fi | |
| make[1]: [/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/db/Makefile.in] Error 1 (ignored) | |
| make[1]: [/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/ctools/Makefile.in] Error 1 (ignored) | |
| make[1]: [/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/misc/Makefile.in] Error 1 (ignored) | |
| make[1]: [/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/sra/Makefile.in] Error 1 (ignored) | |
| make[1]: [/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/sample/Makefile.in] Error 1 (ignored) | |
| make[1]: [/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/internal/Makefile.in] Error 1 (ignored) | |
| make[1]: [/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/gui/Makefile.in] Error 1 (ignored) | |
| make[1]: [/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/check/Makefile.in] Error 1 (ignored) | |
| make[1]: [/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/db/Makefile.in] Error 1 (ignored) | |
| /bin/mkdir -p `dirname /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/db/Makefile.in` | |
| make[1]: [/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/misc/Makefile.in] Error 1 (ignored) | |
| /bin/mkdir -p `dirname /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/misc/Makefile.in` | |
| make[1]: [/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/ctools/Makefile.in] Error 1 (ignored) | |
| /bin/mkdir -p `dirname /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/ctools/Makefile.in` | |
| make[1]: [/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/sra/Makefile.in] Error 1 (ignored) | |
| /bin/mkdir -p `dirname /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/sra/Makefile.in` | |
| make[1]: [/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/sample/Makefile.in] Error 1 (ignored) | |
| /bin/mkdir -p `dirname /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/sample/Makefile.in` | |
| make[1]: [/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/internal/Makefile.in] Error 1 (ignored) | |
| /bin/mkdir -p `dirname /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/internal/Makefile.in` | |
| make[1]: [/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/gui/Makefile.in] Error 1 (ignored) | |
| /bin/mkdir -p `dirname /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/gui/Makefile.in` | |
| make[1]: [/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/check/Makefile.in] Error 1 (ignored) | |
| /bin/mkdir -p `dirname /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/check/Makefile.in` | |
| test -f /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/db/Makefile.in || /bin/cp -p /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/build-system/Makefile.in.skel /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/db/Makefile.in | |
| test -f /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/ctools/Makefile.in || /bin/cp -p /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/build-system/Makefile.in.skel /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/ctools/Makefile.in | |
| test -f /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/misc/Makefile.in || /bin/cp -p /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/build-system/Makefile.in.skel /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/misc/Makefile.in | |
| test -f /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/sra/Makefile.in || /bin/cp -p /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/build-system/Makefile.in.skel /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/sra/Makefile.in | |
| test -f /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/gui/Makefile.in || /bin/cp -p /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/build-system/Makefile.in.skel /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/gui/Makefile.in | |
| test -f /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/sample/Makefile.in || /bin/cp -p /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/build-system/Makefile.in.skel /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/sample/Makefile.in | |
| test -f /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/check/Makefile.in || /bin/cp -p /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/build-system/Makefile.in.skel /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/check/Makefile.in | |
| test -f /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/internal/Makefile.in || /bin/cp -p /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/build-system/Makefile.in.skel /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/internal/Makefile.in | |
| /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/scripts/common/impl/update_configurable.sh /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT db/Makefile | |
| /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/scripts/common/impl/update_configurable.sh /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT ctools/Makefile | |
| /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/scripts/common/impl/update_configurable.sh /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT misc/Makefile | |
| /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/scripts/common/impl/update_configurable.sh /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT sra/Makefile | |
| /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/scripts/common/impl/update_configurable.sh /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT gui/Makefile | |
| /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/scripts/common/impl/update_configurable.sh /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT sample/Makefile | |
| /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/scripts/common/impl/update_configurable.sh /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT internal/Makefile | |
| /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/scripts/common/impl/update_configurable.sh /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT check/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/gui/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/ctools/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/db/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/internal/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/misc/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/check/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/sra/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/sample/Makefile | |
| /usr/bin/make -C corelib -j --jobserver-fds=3,5 all_r || exit 5 | |
| make[2]: [/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/test/Makefile.in] Error 1 (ignored) | |
| make[2]: [/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/test/Makefile.in] Error 1 (ignored) | |
| /bin/mkdir -p `dirname /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/test/Makefile.in` | |
| test -f /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/test/Makefile.in || /bin/cp -p /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/build-system/Makefile.in.skel /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/test/Makefile.in | |
| /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/scripts/common/impl/update_configurable.sh /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT test/Makefile | |
| config.status: creating /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/corelib/test/Makefile | |
| /usr/bin/make[3] (Makefile.precompile): Nothing to be done for `all'. | |
| /usr/bin/make[2] (Makefile.corelib.lib): Nothing to be done for `export-headers'. | |
| /usr/bin/make[2] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. | |
| /usr/bin/make[2] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. | |
| /usr/bin/make -f /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib TMPL=corelib -j --jobserver-fds=3,5 all | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbierror.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbi_toolkit.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/perf_log.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbi_autoinit.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/interprocess_lock.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/resource_info.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/expr.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbi_strings.c. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/request_control.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/request_ctx.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/version.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/syslog.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/stream_utils.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/rwstreambuf.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/plugin_manager_store.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/plugin_manager.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/obj_store.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbitime.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbithr.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbistre.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbistr.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbireg.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbiobj.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbimtx.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbimempool.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbifile.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbiexpt.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbiexec.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbienv.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbidll.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbidiag_p.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbidiag.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbidbg.cpp. | |
| Updating dependency information for ncbicfg.c. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbiatomic.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbiargs.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbiapp.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbi_system.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbi_stack.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbi_signal.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbi_safe_static.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbi_process.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbi_param.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbi_config.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/metareg.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/env_reg.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ddumpable.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/blob_storage.cpp. | |
| Updating dependency information for /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbi_os_unix.cpp. | |
| /usr/local/Library/ENV/4.3/g++-4.9 -std=gnu++11 -c -Wall -Wno-format-y2k -m64 -fopenmp -O2 -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/inc -I/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o | |
| /usr/local/Library/ENV/4.3/g++-4.9 -std=gnu++11 -c -Wall -Wno-format-y2k -m64 -fopenmp -O2 -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/inc -I/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/blob_storage.cpp -o blob_storage.o | |
| /usr/local/Library/ENV/4.3/g++-4.9 -std=gnu++11 -c -Wall -Wno-format-y2k -m64 -fopenmp -O2 -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/inc -I/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ddumpable.cpp -o ddumpable.o | |
| /usr/local/Library/ENV/4.3/g++-4.9 -std=gnu++11 -c -Wall -Wno-format-y2k -m64 -fopenmp -O2 -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/inc -I/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/env_reg.cpp -o env_reg.o | |
| /usr/local/Library/ENV/4.3/g++-4.9 -std=gnu++11 -c -Wall -Wno-format-y2k -m64 -fopenmp -O2 -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/inc -I/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/metareg.cpp -o metareg.o | |
| /usr/local/Library/ENV/4.3/g++-4.9 -std=gnu++11 -c -Wall -Wno-format-y2k -m64 -fopenmp -O2 -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/inc -I/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbi_config.cpp -o ncbi_config.o | |
| /usr/local/Library/ENV/4.3/g++-4.9 -std=gnu++11 -c -Wall -Wno-format-y2k -m64 -fopenmp -O2 -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/inc -I/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbi_param.cpp -o ncbi_param.o | |
| /usr/local/Library/ENV/4.3/g++-4.9 -std=gnu++11 -c -Wall -Wno-format-y2k -m64 -fopenmp -O2 -fno-common -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -m64 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/inc -I/private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbi_process.cpp -o ncbi_process.o | |
| In file included from /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr.h:52:0, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistl.hpp:219, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistre.hpp:40, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbi_stack.hpp:35, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbidiag.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbiexpt.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/tempstr.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistr.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistd.hpp:37, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbicntr.hpp:40, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbiobj.hpp:39, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbiargs.hpp:84, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbiapp.hpp:43, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbi_param.hpp:41, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbi_param.cpp:35: | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h: In member function 'virtual void* std::_Sp_counted_deleter<_Ptr, _Deleter, _Alloc, _Lp>::_M_get_deleter(const std::type_info&)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h:479:39: error: must #include <typeinfo> before using typeid | |
| return __ti == typeid(_Deleter) ? &_M_impl._M_del() : nullptr; | |
| ^ | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h: In member function 'virtual void* std::_Sp_counted_ptr_inplace<_Tp, _Alloc, _Lp>::_M_get_deleter(const std::type_info&)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h:543:40: error: must #include <typeinfo> before using typeid | |
| if (__ti == typeid(_Sp_make_shared_tag)) | |
| ^ | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h: In constructor 'std::__shared_ptr<_Tp, _Lp>::__shared_ptr(std::_Sp_make_shared_tag, const _Alloc&, _Args&& ...)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h:1094:50: error: must #include <typeinfo> before using typeid | |
| void* __p = _M_refcount._M_get_deleter(typeid(__tag)); | |
| ^ | |
| In file included from /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr.h:52:0, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistl.hpp:219, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistre.hpp:40, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbi_stack.hpp:35, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbidiag.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbiexpt.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/tempstr.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistr.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistd.hpp:37, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbithr_conf.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbimtx.hpp:62, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbienv.hpp:40, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/env_reg.hpp:37, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/env_reg.cpp:35: | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h: In member function 'virtual void* std::_Sp_counted_deleter<_Ptr, _Deleter, _Alloc, _Lp>::_M_get_deleter(const std::type_info&)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h:479:39: error: must #include <typeinfo> before using typeid | |
| return __ti == typeid(_Deleter) ? &_M_impl._M_del() : nullptr; | |
| ^ | |
| In file included from /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr.h:52:0, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistl.hpp:219, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistre.hpp:40, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbi_stack.hpp:35, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbidiag.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/error_codes.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbi_process.cpp:31: | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h: In member function 'virtual void* std::_Sp_counted_deleter<_Ptr, _Deleter, _Alloc, _Lp>::_M_get_deleter(const std::type_info&)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h:479:39: error: must #include <typeinfo> before using typeid | |
| return __ti == typeid(_Deleter) ? &_M_impl._M_del() : nullptr; | |
| ^ | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h: In member function 'virtual void* std::_Sp_counted_ptr_inplace<_Tp, _Alloc, _Lp>::_M_get_deleter(const std::type_info&)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h:543:40: error: must #include <typeinfo> before using typeid | |
| if (__ti == typeid(_Sp_make_shared_tag)) | |
| ^ | |
| In file included from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistl.hpp:219:0, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistre.hpp:40, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbi_stack.hpp:35, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbidiag.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbiexpt.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/tempstr.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistr.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistd.hpp:37, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbicntr.hpp:40, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbiobj.hpp:39, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbiargs.hpp:84, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbiapp.hpp:43, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbi_param.hpp:41, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbi_param.cpp:35: | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr.h: In function '_Del* std::get_deleter(const std::__shared_ptr<_Tp2, _Lp>&)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr.h:79:63: error: must #include <typeinfo> before using typeid | |
| return static_cast<_Del*>(__p._M_get_deleter(typeid(_Del))); | |
| ^ | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h: In member function 'virtual void* std::_Sp_counted_ptr_inplace<_Tp, _Alloc, _Lp>::_M_get_deleter(const std::type_info&)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h:543:40: error: must #include <typeinfo> before using typeid | |
| if (__ti == typeid(_Sp_make_shared_tag)) | |
| ^ | |
| In file included from /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr.h:52:0, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistl.hpp:219, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistre.hpp:40, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbi_stack.hpp:35, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbidiag.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbiexpt.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/tempstr.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistr.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistd.hpp:37, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ddumpable.hpp:36, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ddumpable.cpp:34: | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h: In member function 'virtual void* std::_Sp_counted_deleter<_Ptr, _Deleter, _Alloc, _Lp>::_M_get_deleter(const std::type_info&)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h:479:39: error: must #include <typeinfo> before using typeid | |
| return __ti == typeid(_Deleter) ? &_M_impl._M_del() : nullptr; | |
| ^ | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h: In member function 'virtual void* std::_Sp_counted_ptr_inplace<_Tp, _Alloc, _Lp>::_M_get_deleter(const std::type_info&)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h:543:40: error: must #include <typeinfo> before using typeid | |
| if (__ti == typeid(_Sp_make_shared_tag)) | |
| ^ | |
| In file included from /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr.h:52:0, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistl.hpp:219, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistre.hpp:40, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbi_stack.hpp:35, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbidiag.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbiexpt.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/tempstr.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistr.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistd.hpp:37, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbi_config.cpp:35: | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h: In member function 'virtual void* std::_Sp_counted_deleter<_Ptr, _Deleter, _Alloc, _Lp>::_M_get_deleter(const std::type_info&)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h:479:39: error: must #include <typeinfo> before using typeid | |
| return __ti == typeid(_Deleter) ? &_M_impl._M_del() : nullptr; | |
| ^ | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h: In member function 'virtual void* std::_Sp_counted_ptr_inplace<_Tp, _Alloc, _Lp>::_M_get_deleter(const std::type_info&)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h:543:40: error: must #include <typeinfo> before using typeid | |
| if (__ti == typeid(_Sp_make_shared_tag)) | |
| ^ | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h: In constructor 'std::__shared_ptr<_Tp, _Lp>::__shared_ptr(std::_Sp_make_shared_tag, const _Alloc&, _Args&& ...)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h:1094:50: error: must #include <typeinfo> before using typeid | |
| void* __p = _M_refcount._M_get_deleter(typeid(__tag)); | |
| ^ | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h: In constructor 'std::__shared_ptr<_Tp, _Lp>::__shared_ptr(std::_Sp_make_shared_tag, const _Alloc&, _Args&& ...)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h:1094:50: error: must #include <typeinfo> before using typeid | |
| void* __p = _M_refcount._M_get_deleter(typeid(__tag)); | |
| ^ | |
| In file included from /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr.h:52:0, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistl.hpp:219, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistre.hpp:40, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbi_stack.hpp:35, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbidiag.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/error_codes.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbi_os_unix.cpp:33: | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h: In member function 'virtual void* std::_Sp_counted_deleter<_Ptr, _Deleter, _Alloc, _Lp>::_M_get_deleter(const std::type_info&)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h:479:39: error: must #include <typeinfo> before using typeid | |
| return __ti == typeid(_Deleter) ? &_M_impl._M_del() : nullptr; | |
| ^ | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h: In member function 'virtual void* std::_Sp_counted_ptr_inplace<_Tp, _Alloc, _Lp>::_M_get_deleter(const std::type_info&)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h:543:40: error: must #include <typeinfo> before using typeid | |
| if (__ti == typeid(_Sp_make_shared_tag)) | |
| ^ | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h: In constructor 'std::__shared_ptr<_Tp, _Lp>::__shared_ptr(std::_Sp_make_shared_tag, const _Alloc&, _Args&& ...)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h:1094:50: error: must #include <typeinfo> before using typeid | |
| void* __p = _M_refcount._M_get_deleter(typeid(__tag)); | |
| ^ | |
| In file included from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistl.hpp:219:0, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistre.hpp:40, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbi_stack.hpp:35, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbidiag.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbiexpt.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/tempstr.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistr.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistd.hpp:37, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbithr_conf.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbimtx.hpp:62, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbienv.hpp:40, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/env_reg.hpp:37, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/env_reg.cpp:35: | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr.h: In function '_Del* std::get_deleter(const std::__shared_ptr<_Tp2, _Lp>&)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr.h:79:63: error: must #include <typeinfo> before using typeid | |
| return static_cast<_Del*>(__p._M_get_deleter(typeid(_Del))); | |
| ^ | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h: In constructor 'std::__shared_ptr<_Tp, _Lp>::__shared_ptr(std::_Sp_make_shared_tag, const _Alloc&, _Args&& ...)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h:1094:50: error: must #include <typeinfo> before using typeid | |
| void* __p = _M_refcount._M_get_deleter(typeid(__tag)); | |
| ^ | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h: In constructor 'std::__shared_ptr<_Tp, _Lp>::__shared_ptr(std::_Sp_make_shared_tag, const _Alloc&, _Args&& ...)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h:1094:50: error: must #include <typeinfo> before using typeid | |
| void* __p = _M_refcount._M_get_deleter(typeid(__tag)); | |
| ^ | |
| In file included from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistl.hpp:219:0, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistre.hpp:40, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbi_stack.hpp:35, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbidiag.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbiexpt.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/tempstr.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistr.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistd.hpp:37, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ddumpable.hpp:36, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ddumpable.cpp:34: | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr.h: In function '_Del* std::get_deleter(const std::__shared_ptr<_Tp2, _Lp>&)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr.h:79:63: error: must #include <typeinfo> before using typeid | |
| return static_cast<_Del*>(__p._M_get_deleter(typeid(_Del))); | |
| ^ | |
| In file included from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistl.hpp:219:0, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistre.hpp:40, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbi_stack.hpp:35, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbidiag.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/error_codes.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbi_process.cpp:31: | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr.h: In function '_Del* std::get_deleter(const std::__shared_ptr<_Tp2, _Lp>&)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr.h:79:63: error: must #include <typeinfo> before using typeid | |
| return static_cast<_Del*>(__p._M_get_deleter(typeid(_Del))); | |
| ^ | |
| In file included from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistl.hpp:219:0, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistre.hpp:40, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbi_stack.hpp:35, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbidiag.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbiexpt.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/tempstr.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistr.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistd.hpp:37, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbi_config.cpp:35: | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr.h: In function '_Del* std::get_deleter(const std::__shared_ptr<_Tp2, _Lp>&)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr.h:79:63: error: must #include <typeinfo> before using typeid | |
| return static_cast<_Del*>(__p._M_get_deleter(typeid(_Del))); | |
| ^ | |
| In file included from /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr.h:52:0, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistl.hpp:219, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistre.hpp:40, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbi_stack.hpp:35, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbidiag.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbiexpt.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/tempstr.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistr.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistd.hpp:37, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/blob_storage.hpp:36, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/blob_storage.cpp:33: | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h: In member function 'virtual void* std::_Sp_counted_deleter<_Ptr, _Deleter, _Alloc, _Lp>::_M_get_deleter(const std::type_info&)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h:479:39: error: must #include <typeinfo> before using typeid | |
| return __ti == typeid(_Deleter) ? &_M_impl._M_del() : nullptr; | |
| ^ | |
| In file included from /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr.h:52:0, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistl.hpp:219, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistre.hpp:40, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbi_stack.hpp:35, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbidiag.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbiexpt.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/tempstr.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistr.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistd.hpp:37, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbithr_conf.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbimtx.hpp:62, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/metareg.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/metareg.cpp:35: | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h: In member function 'virtual void* std::_Sp_counted_deleter<_Ptr, _Deleter, _Alloc, _Lp>::_M_get_deleter(const std::type_info&)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h:479:39: error: must #include <typeinfo> before using typeid | |
| return __ti == typeid(_Deleter) ? &_M_impl._M_del() : nullptr; | |
| ^ | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h: In member function 'virtual void* std::_Sp_counted_ptr_inplace<_Tp, _Alloc, _Lp>::_M_get_deleter(const std::type_info&)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h:543:40: error: must #include <typeinfo> before using typeid | |
| if (__ti == typeid(_Sp_make_shared_tag)) | |
| ^ | |
| In file included from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistl.hpp:219:0, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistre.hpp:40, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbi_stack.hpp:35, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbidiag.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/error_codes.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/ncbi_os_unix.cpp:33: | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr.h: In function '_Del* std::get_deleter(const std::__shared_ptr<_Tp2, _Lp>&)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr.h:79:63: error: must #include <typeinfo> before using typeid | |
| return static_cast<_Del*>(__p._M_get_deleter(typeid(_Del))); | |
| ^ | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h: In member function 'virtual void* std::_Sp_counted_ptr_inplace<_Tp, _Alloc, _Lp>::_M_get_deleter(const std::type_info&)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h:543:40: error: must #include <typeinfo> before using typeid | |
| if (__ti == typeid(_Sp_make_shared_tag)) | |
| ^ | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h: In constructor 'std::__shared_ptr<_Tp, _Lp>::__shared_ptr(std::_Sp_make_shared_tag, const _Alloc&, _Args&& ...)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h:1094:50: error: must #include <typeinfo> before using typeid | |
| void* __p = _M_refcount._M_get_deleter(typeid(__tag)); | |
| ^ | |
| In file included from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistl.hpp:219:0, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistre.hpp:40, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbi_stack.hpp:35, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbidiag.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbiexpt.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/tempstr.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistr.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistd.hpp:37, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/blob_storage.hpp:36, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/blob_storage.cpp:33: | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr.h: In function '_Del* std::get_deleter(const std::__shared_ptr<_Tp2, _Lp>&)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr.h:79:63: error: must #include <typeinfo> before using typeid | |
| return static_cast<_Del*>(__p._M_get_deleter(typeid(_Del))); | |
| ^ | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h: In constructor 'std::__shared_ptr<_Tp, _Lp>::__shared_ptr(std::_Sp_make_shared_tag, const _Alloc&, _Args&& ...)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr_base.h:1094:50: error: must #include <typeinfo> before using typeid | |
| void* __p = _M_refcount._M_get_deleter(typeid(__tag)); | |
| ^ | |
| In file included from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistl.hpp:219:0, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistre.hpp:40, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbi_stack.hpp:35, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbidiag.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbiexpt.hpp:42, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/tempstr.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistr.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbistd.hpp:37, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbithr_conf.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/ncbimtx.hpp:62, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/include/corelib/metareg.hpp:38, | |
| from /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/src/corelib/metareg.cpp:35: | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr.h: In function '_Del* std::get_deleter(const std::__shared_ptr<_Tp2, _Lp>&)': | |
| /usr/local/Cellar/gcc/4.9.1/lib/gcc/x86_64-apple-darwin12.5.0/4.9.1/include/c++/bits/shared_ptr.h:79:63: error: must #include <typeinfo> before using typeid | |
| return static_cast<_Del*>(__p._M_get_deleter(typeid(_Del))); | |
| ^ | |
| make[3]: *** [ncbi_os_unix.o] Error 1 | |
| make[3]: *** Waiting for unfinished jobs.... | |
| make[3]: *** [ddumpable.o] Error 1 | |
| make[3]: *** [env_reg.o] Error 1 | |
| make[3]: *** [ncbi_param.o] Error 1 | |
| make[3]: *** [ncbi_process.o] Error 1 | |
| make[3]: *** [metareg.o] Error 1 | |
| make[3]: *** [ncbi_config.o] Error 1 | |
| make[3]: *** [blob_storage.o] Error 1 | |
| FAILED: src/corelib/Makefile.corelib.lib | |
| /bin/rm -f libxncbi.a .xncbi.dep .libxncbi.a.stamp | |
| /bin/rm -f /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/lib/libxncbi.a /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/status/.xncbi.dep \ | |
| /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/lib/libxncbi-static.a /private/tmp/blast-vbDJ/ncbi-blast-2.2.29+-src/c++/ReleaseMT/status/.xncbi-static.dep | |
| make[2]: *** [all.nonusr] Error 2 | |
| make[1]: *** [all_r.real] Error 5 | |
| make: *** [all] Error 2 | |
| ==> Formula | |
| Tap: homebrew/homebrew-science | |
| Path: /usr/local/Library/Taps/homebrew/homebrew-science/blast.rb | |
| ==> Configuration | |
| HOMEBREW_VERSION: 0.9.5 | |
| HEAD: b79beee13bf2e0118e9d997cbc026a6a553c6953 | |
| CPU: 8-core 64-bit ivybridge | |
| OS X: 10.8.5-x86_64 | |
| Xcode: 5.1.1 | |
| CLT: 5.1.0.0.1.1396320587 | |
| X11: N/A | |
| ==> ENV | |
| HOMEBREW_CC: gcc-4.9 | |
| HOMEBREW_CXX: g++-4.9 | |
| MAKEFLAGS: -j8 | |
| CMAKE_PREFIX_PATH: /usr/local | |
| CMAKE_INCLUDE_PATH: /usr/include/libxml2:/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| CMAKE_LIBRARY_PATH: /System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| CMAKE_FRAMEWORK_PATH: /usr/local/opt/python/Frameworks | |
| PKG_CONFIG_PATH: /usr/local/opt/libpng/lib/pkgconfig:/usr/local/opt/pcre/lib/pkgconfig | |
| PKG_CONFIG_LIBDIR: /usr/lib/pkgconfig:/usr/local/Library/ENV/pkgconfig/10.8 | |
| ACLOCAL_PATH: /usr/local/share/aclocal | |
| PATH: /usr/local/opt/python/bin:/usr/local/Library/ENV/4.3:/usr/local/opt/jpeg/bin:/usr/local/opt/libpng/bin:/usr/local/opt/pcre/bin:/usr/local/opt/python/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/opt/gcc/bin | |
| Error: blast 2.2.29 did not build | |
| Logs: | |
| /Users/giles/Library/Logs/Homebrew/blast/01.configure | |
| /Users/giles/Library/Logs/Homebrew/blast/01.configure.cc | |
| /Users/giles/Library/Logs/Homebrew/blast/02.make | |
| /Users/giles/Library/Logs/Homebrew/blast/02.make.cc | |
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