Created
November 13, 2014 19:21
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(partial) EasyBuild log for failed build of /tmp/easybuild-I_Pr0c/files_pr1186/TopHat-2.0.12-goolf-1.4.10.eb (PR #1186)
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| == 2014-11-13 19:21:58,004 main.ConfigureMake INFO This is EasyBuild 1.16.0dev (framework: 1.16.0dev, easyblocks: 1.16.0dev) on host crick. | |
| == 2014-11-13 19:21:58,004 main.ConfigureMake INFO This is easyblock ConfigureMake from module easybuild.easyblocks.generic.configuremake (/home/rob/scratch/eb-dev/easybuild-easyblocks/easybuild/easyblocks/generic/configuremake.pyc) | |
| == 2014-11-13 19:21:58,004 main.ConfigureMake INFO Build dir set to /home/rob/.local/easybuild/build/TopHat/2.0.12/goolf-1.4.10 | |
| == 2014-11-13 19:21:58,005 main.ConfigureMake INFO Install dir set to /home/rob/.local/easybuild/software/TopHat/2.0.12-goolf-1.4.10 | |
| == 2014-11-13 19:21:58,005 main.ConfigureMake INFO Init completed for application name TopHat version 2.0.12 | |
| == 2014-11-13 19:21:58,005 main.easyblock.<module> INFO Obtained application instance of for TopHat (easyblock: None) | |
| == 2014-11-13 19:21:58,006 main.ConfigureMake INFO building and installing TopHat/2.0.12-goolf-1.4.10... | |
| == 2014-11-13 19:21:58,006 main.ConfigureMake INFO fetching files... | |
| == 2014-11-13 19:21:58,006 main.ConfigureMake INFO Starting fetch step | |
| == 2014-11-13 19:21:58,009 main.ConfigureMake INFO Running method fetch_step part of step fetch | |
| == 2014-11-13 19:21:58,010 main.ConfigureMake WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2014-11-13 19:21:58,027 main.filetools INFO Creating directory /home/rob/.local/easybuild/sources/t/TopHat (parents: True, set_gid: False, sticky: False) | |
| == 2014-11-13 19:21:58,730 main.filetools INFO Downloaded file tophat-2.0.12.tar.gz from url http://ccb.jhu.edu/software/tophat/downloads/tophat-2.0.12.tar.gz to /home/rob/.local/easybuild/sources/t/TopHat/tophat-2.0.12.tar.gz | |
| == 2014-11-13 19:21:58,730 main.filetools INFO Successful download of file tophat-2.0.12.tar.gz from url http://ccb.jhu.edu/software/tophat/downloads/tophat-2.0.12.tar.gz to path /home/rob/.local/easybuild/sources/t/TopHat/tophat-2.0.12.tar.gz | |
| == 2014-11-13 19:21:58,730 main.ConfigureMake INFO Successfully downloaded source file tophat-2.0.12.tar.gz from http://ccb.jhu.edu/software/tophat/downloads/tophat-2.0.12.tar.gz | |
| == 2014-11-13 19:21:58,731 main.ConfigureMake INFO Added sources: [{'path': '/home/rob/.local/easybuild/sources/t/TopHat/tophat-2.0.12.tar.gz', 'cmd': None, 'finalpath': '/home/rob/.local/easybuild/build/TopHat/2.0.12/goolf-1.4.10', 'name': 'tophat-2.0.12.tar.gz', 'checksum': None}] | |
| == 2014-11-13 19:21:58,731 main.ConfigureMake INFO no patches provided | |
| == 2014-11-13 19:21:58,736 main.ConfigureMake INFO md5 checksum for /home/rob/.local/easybuild/sources/t/TopHat/tophat-2.0.12.tar.gz: b419604b45d94f6e878a141f05dd1d75 | |
| == 2014-11-13 19:21:58,737 main.ConfigureMake INFO Setting parallelism: 1 | |
| == 2014-11-13 19:21:58,737 main.ConfigureMake INFO Checking dirs that need to be created: ['/home/rob/.local/easybuild/software/TopHat', '/home/rob/.local/easybuild/modules/all/TopHat', '/home/rob/.local/easybuild/modules/bio/TopHat'] | |
| == 2014-11-13 19:21:58,738 main.filetools INFO Creating directory /home/rob/.local/easybuild/software/TopHat (parents: True, set_gid: False, sticky: False) | |
| == 2014-11-13 19:21:58,738 main.filetools INFO Creating directory /home/rob/.local/easybuild/modules/all/TopHat (parents: True, set_gid: False, sticky: False) | |
| == 2014-11-13 19:21:58,739 main.filetools INFO Creating directory /home/rob/.local/easybuild/modules/bio/TopHat (parents: True, set_gid: False, sticky: False) | |
| == 2014-11-13 19:21:58,740 main.ConfigureMake INFO creating build dir, resetting environment... | |
| == 2014-11-13 19:21:58,740 main.ConfigureMake INFO Starting ready step | |
| == 2014-11-13 19:21:58,743 main.ConfigureMake INFO Running method check_readiness_step part of step ready | |
| == 2014-11-13 19:21:58,802 main.ConfigureMake WARNING Loaded modules detected: ['DevEnv', 'EasyBuild/git'] | |
| == 2014-11-13 19:21:58,917 main.main.main.Goolf ERROR EasyBuild crashed with an error (at easybuild/tools/toolchain/toolchain.py:296 in add_dependencies): add_dependencies: no module 'Boost/1.51.0-goolf-1.4.10-Python-2.7.3' found for dependency {'dummy': False, 'toolchain': {'version': '1.4.10', 'name': 'goolf'}, 'name': 'Boost', 'short_mod_name': 'Boost/1.51.0-goolf-1.4.10-Python-2.7.3', 'versionsuffix': '-Python-2.7.3', 'full_mod_name': 'Boost/1.51.0-goolf-1.4.10-Python-2.7.3', 'version': '1.51.0', 'hidden': False} | |
| == 2014-11-13 19:21:58,918 main.easyblock.<module> WARNING build failed (first 300 chars): EasyBuild crashed with an error (at easybuild/tools/toolchain/toolchain.py:296 in add_dependencies): add_dependencies: no module 'Boost/1.51.0-goolf-1.4.10-Python-2.7.3' found for dependency {'dummy': False, 'toolchain': {'version': '1.4.10', 'name': 'goolf'}, 'name': 'Boost', 'short_mod_name': 'Boo | |
| == 2014-11-13 19:21:58,918 main.ConfigureMake INFO Closing log for application name TopHat version 2.0.12 |
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