gistfile1.yaml

2.0.8-ictce-5.3.0:
    version: 2.0.8
    toolchain: 
        name: 'ictce'
        version: '5.3.0'
    samver: 0.1.18
    boostver: 1.51.0
    pythonver: 2.7.3
    zlibver: 1.2.7

2.0.4-goolf-1.4.10:
    version: 2.0.4
    toolchain:
        name: 'goolf'
        version: '1.4.10'
    samver: 0.1.18
    boostver: 1.51.0
    pythonver: 2.7.3
    zlibver: 1.2.7



default_ictce:
    inherit: default
    patches: 
        - tophat_ictce.patch


default:  
  easyblock: 'ConfigureMake'
  name: 'TopHat'
  homepage: 'http://ccb.jhu.edu/software/tophat/'
  description: """TopHat is a fast splice junction mapper for RNA-Seq reads."""
  toolchainopts: 
    optarch: True, 
    pic: True
  sources:
    - SOURCELOWER_TAR_GZ
  source_urls:
    - 'http://ccb.jhu.edu/software/tophat/downloads/'
  dependencies:
    -
      - 'Boost'
      - boostver
      - '-Python-%(pythonver)s'
    -
      - 'SAMtools'
      - samver
    -
      - 'zlib' 
      - zlibver
  configopts: '--with-boost=$EBROOTBOOST --with-bam=$EBROOTSAMTOOLS'
  sanity_check_paths:
    files: 
      - 'bin/tophat'
    dirs: 
  parallel: 1  # not sure for a parallel build
  moduleclass: 'bio'