Skip to content

Instantly share code, notes, and snippets.

@rjeschmi
Created May 12, 2020 00:07
Show Gist options
  • Save rjeschmi/4143acb8711c22df289d461ad2209dbb to your computer and use it in GitHub Desktop.
Save rjeschmi/4143acb8711c22df289d461ad2209dbb to your computer and use it in GitHub Desktop.
(partial) EasyBuild log for failed build of /tmp/eb-a1qutd5s/files_pr10615/m/M4/M4-1.4.18-GCCcore-10.1.0.eb (PR #10615)
== 2020-05-11 20:07:28,464 easyblock.py:280 INFO This is EasyBuild 4.2.1.dev0-r018337e94442d83ec32fd9a9a242273b69996b1b (framework: 4.2.1.dev0-r018337e94442d83ec32fd9a9a242273b69996b1b, easyblocks: 4.2.1.dev0-r052da71632c1622d61a943795adf06241933b2db) on host ryzen37.
== 2020-05-11 20:07:28,464 easyblock.py:286 INFO This is easyblock ConfigureMake from module easybuild.easyblocks.generic.configuremake (/home/rob/git/eb-devel-install/eb/easybuild-easyblocks/easybuild/easyblocks/generic/configuremake.py)
== 2020-05-11 20:07:28,464 easyblock.py:843 INFO Build dir set to /eb/arch-znver2/build/M4/1.4.18/GCCcore-10.1.0
== 2020-05-11 20:07:28,464 easyblock.py:903 INFO Software install dir set to /eb/arch-znver2/software/M4/1.4.18-GCCcore-10.1.0
== 2020-05-11 20:07:28,464 easyblock.py:908 INFO Module install dir set to /eb/arch-znver2/modules/all
== 2020-05-11 20:07:28,464 easyblock.py:265 INFO Init completed for application name M4 version 1.4.18
== 2020-05-11 20:07:28,464 easyblock.py:3208 INFO Obtained application instance of for M4 (easyblock: ConfigureMake)
== 2020-05-11 20:07:29,466 one.py:159 INFO Skipping reformatting value for parameter 'toolchain'
== 2020-05-11 20:07:29,467 filetools.py:1494 INFO Creating directory /tmp/eb-a1qutd5s/reprod_20200511200729_4145900 (parents: True, set_gid: False, sticky: False)
== 2020-05-11 20:07:29,467 easyblock.py:3385 INFO Dumped easyconfig instance to /tmp/eb-a1qutd5s/reprod_20200511200729_4145900/M4-1.4.18-GCCcore-10.1.0.eb
== 2020-05-11 20:07:29,467 filetools.py:1494 INFO Creating directory /tmp/eb-a1qutd5s/reprod_20200511200729_4145900/easyblocks (parents: True, set_gid: False, sticky: False)
== 2020-05-11 20:07:29,467 filetools.py:2087 INFO /home/rob/git/eb-devel-install/eb/easybuild-easyblocks/easybuild/easyblocks/generic/configuremake.py copied to /tmp/eb-a1qutd5s/reprod_20200511200729_4145900/easyblocks/configuremake.py
== 2020-05-11 20:07:29,467 easyblock.py:3400 INFO Dumped easyblock configuremake.py required for reproduction to /tmp/eb-a1qutd5s/reprod_20200511200729_4145900/easyblocks
== 2020-05-11 20:07:29,467 easyblock.py:1635 INFO Number of iterations to perform for central part of installation procedure: 1
== 2020-05-11 20:07:29,467 build_log.py:265 INFO building and installing M4/1.4.18-GCCcore-10.1.0...
== 2020-05-11 20:07:29,467 filetools.py:1596 INFO Lock /eb/arch-znver2/software/.locks/_eb_arch-znver2_software_M4_1.4.18-GCCcore-10.1.0.lock does not exist
== 2020-05-11 20:07:29,467 filetools.py:1537 INFO Creating lock at /eb/arch-znver2/software/.locks/_eb_arch-znver2_software_M4_1.4.18-GCCcore-10.1.0.lock...
== 2020-05-11 20:07:29,467 filetools.py:1494 INFO Creating directory /eb/arch-znver2/software/.locks/_eb_arch-znver2_software_M4_1.4.18-GCCcore-10.1.0.lock (parents: True, set_gid: False, sticky: False)
== 2020-05-11 20:07:29,467 filetools.py:1546 INFO Lock created: /eb/arch-znver2/software/.locks/_eb_arch-znver2_software_M4_1.4.18-GCCcore-10.1.0.lock
== 2020-05-11 20:07:29,467 build_log.py:265 INFO fetching files...
== 2020-05-11 20:07:29,467 easyblock.py:2968 INFO Starting fetch step
== 2020-05-11 20:07:29,468 easyblock.py:2974 INFO Running method fetch_step part of step fetch
== 2020-05-11 20:07:29,468 easyblock.py:1744 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
== 2020-05-11 20:07:29,468 tools.py:266 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /home/rob/git/eb-devel-install/eb/easybuild-framework/eb
== 2020-05-11 20:07:29,468 tools.py:282 INFO Not considering /home/rob/git/eb-devel-install/eb (no easybuild/easyconfigs subdir found)
== 2020-05-11 20:07:29,468 easyblock.py:671 INFO Found file m4-1.4.18.tar.gz at /eb/sources/m/M4/m4-1.4.18.tar.gz
== 2020-05-11 20:07:29,468 easyblock.py:394 INFO Added sources: [{'name': 'm4-1.4.18.tar.gz', 'path': '/eb/sources/m/M4/m4-1.4.18.tar.gz', 'cmd': None, 'checksum': 'ab2633921a5cd38e48797bf5521ad259bdc4b979078034a3b790d7fec5493fab', 'finalpath': '/eb/arch-znver2/build/M4/1.4.18/GCCcore-10.1.0'}]
== 2020-05-11 20:07:29,468 tools.py:266 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /home/rob/git/eb-devel-install/eb/easybuild-framework/eb
== 2020-05-11 20:07:29,468 tools.py:282 INFO Not considering /home/rob/git/eb-devel-install/eb (no easybuild/easyconfigs subdir found)
== 2020-05-11 20:07:29,468 easyblock.py:671 INFO Found file M4-1.4.18_glibc_2.28.patch at /home/rob/git/eb-devel-install/eb/easybuild-easyconfigs/easybuild/easyconfigs/m/M4/M4-1.4.18_glibc_2.28.patch
== 2020-05-11 20:07:29,468 easyblock.py:460 INFO Added patches: [{'name': 'M4-1.4.18_glibc_2.28.patch', 'path': '/home/rob/git/eb-devel-install/eb/easybuild-easyconfigs/easybuild/easyconfigs/m/M4/M4-1.4.18_glibc_2.28.patch', 'checksum': 'a613c18f00b1a3caa46ae4b8b849a0f4f71095ad860f4fcd6c6bb4ae211681fa'}]
== 2020-05-11 20:07:29,471 easyblock.py:1795 INFO md5 checksum for /eb/sources/m/M4/m4-1.4.18.tar.gz: a077779db287adf4e12a035029002d28
== 2020-05-11 20:07:29,472 easyblock.py:1795 INFO sha256 checksum for /eb/sources/m/M4/m4-1.4.18.tar.gz: ab2633921a5cd38e48797bf5521ad259bdc4b979078034a3b790d7fec5493fab
== 2020-05-11 20:07:29,472 easyblock.py:1795 INFO md5 checksum for /home/rob/git/eb-devel-install/eb/easybuild-easyconfigs/easybuild/easyconfigs/m/M4/M4-1.4.18_glibc_2.28.patch: 3b8733619f7487da2635dacdf5e601ef
== 2020-05-11 20:07:29,472 easyblock.py:1795 INFO sha256 checksum for /home/rob/git/eb-devel-install/eb/easybuild-easyconfigs/easybuild/easyconfigs/m/M4/M4-1.4.18_glibc_2.28.patch: a613c18f00b1a3caa46ae4b8b849a0f4f71095ad860f4fcd6c6bb4ae211681fa
== 2020-05-11 20:07:29,472 easyblock.py:1830 INFO Checking dirs that need to be created: ['/eb/arch-znver2/software/M4/1.4.18-GCCcore-10.1.0', '/eb/arch-znver2/modules/all/M4', '/eb/arch-znver2/modules/devel/M4']
== 2020-05-11 20:07:29,472 filetools.py:1494 INFO Creating directory /eb/arch-znver2/software/M4/1.4.18-GCCcore-10.1.0 (parents: True, set_gid: False, sticky: False)
== 2020-05-11 20:07:29,472 filetools.py:1494 INFO Creating directory /eb/arch-znver2/modules/all/M4 (parents: True, set_gid: False, sticky: False)
== 2020-05-11 20:07:29,473 filetools.py:1494 INFO Creating directory /eb/arch-znver2/modules/devel/M4 (parents: True, set_gid: False, sticky: False)
== 2020-05-11 20:07:29,473 configuremake.py:125 INFO Found recent config.guess at /eb/sources/generic/eb_v4.2.1.dev0/ConfigureMake/config.guess, using it if required
== 2020-05-11 20:07:29,473 build_log.py:265 INFO creating build dir, resetting environment...
== 2020-05-11 20:07:29,473 easyblock.py:2968 INFO Starting ready step
== 2020-05-11 20:07:29,473 easyblock.py:2974 INFO Running method check_readiness_step part of step ready
== 2020-05-11 20:07:29,476 easyblock.py:1654 INFO Setting parallelism: 16
== 2020-05-11 20:07:29,500 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '')
== 2020-05-11 20:07:29,500 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2020-05-11 20:07:29,500 easyblock.py:1693 WARNING Loaded modules detected: ['EasyBuild-znver2']
== 2020-05-11 20:07:29,500 easyblock.py:2974 INFO Running method make_builddir part of step ready
== 2020-05-11 20:07:29,500 filetools.py:1494 INFO Creating directory /eb/arch-znver2/build/M4/1.4.18/GCCcore-10.1.0 (parents: True, set_gid: False, sticky: False)
== 2020-05-11 20:07:29,500 easyblock.py:2974 INFO Running method reset_env part of step ready
== 2020-05-11 20:07:29,500 easyblock.py:2974 INFO Running method handle_iterate_opts part of step ready
== 2020-05-11 20:07:29,501 build_log.py:265 INFO unpacking...
== 2020-05-11 20:07:29,501 easyblock.py:2968 INFO Starting source step
== 2020-05-11 20:07:29,501 easyblock.py:2974 INFO Running method checksum_step part of step source
== 2020-05-11 20:07:29,502 easyblock.py:1846 INFO Checksum verification for /eb/sources/m/M4/m4-1.4.18.tar.gz using ab2633921a5cd38e48797bf5521ad259bdc4b979078034a3b790d7fec5493fab passed.
== 2020-05-11 20:07:29,502 easyblock.py:1846 INFO Checksum verification for /home/rob/git/eb-devel-install/eb/easybuild-easyconfigs/easybuild/easyconfigs/m/M4/M4-1.4.18_glibc_2.28.patch using a613c18f00b1a3caa46ae4b8b849a0f4f71095ad860f4fcd6c6bb4ae211681fa passed.
== 2020-05-11 20:07:29,502 easyblock.py:2974 INFO Running method extract_step part of step source
== 2020-05-11 20:07:29,502 easyblock.py:1933 INFO Unpacking source m4-1.4.18.tar.gz
== 2020-05-11 20:07:29,503 run.py:222 INFO running cmd: tar xzf /eb/sources/m/M4/m4-1.4.18.tar.gz
== 2020-05-11 20:07:29,551 build_log.py:265 INFO patching...
== 2020-05-11 20:07:29,551 easyblock.py:2968 INFO Starting patch step
== 2020-05-11 20:07:29,552 easyblock.py:2974 INFO Running method patch_step part of step patch
== 2020-05-11 20:07:29,552 easyblock.py:1947 INFO Applying patch M4-1.4.18_glibc_2.28.patch
== 2020-05-11 20:07:29,552 run.py:222 INFO running cmd: patch -b -p1 -i /home/rob/git/eb-devel-install/eb/easybuild-easyconfigs/easybuild/easyconfigs/m/M4/M4-1.4.18_glibc_2.28.patch
== 2020-05-11 20:07:29,555 build_log.py:265 INFO preparing...
== 2020-05-11 20:07:29,555 easyblock.py:2968 INFO Starting prepare step
== 2020-05-11 20:07:29,555 easyblock.py:2974 INFO Running method prepare_step part of step prepare
== 2020-05-11 20:07:29,580 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '')
== 2020-05-11 20:07:29,580 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2020-05-11 20:07:29,580 build_log.py:169 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:124 in __init__): Missing modules for dependencies (use --robot?): binutils/2.34 (at easybuild/tools/toolchain/toolchain.py:503 in _check_dependencies)
== 2020-05-11 20:07:29,581 filetools.py:1604 INFO Removing lock /eb/arch-znver2/software/.locks/_eb_arch-znver2_software_M4_1.4.18-GCCcore-10.1.0.lock...
== 2020-05-11 20:07:29,581 filetools.py:329 INFO Path /eb/arch-znver2/software/.locks/_eb_arch-znver2_software_M4_1.4.18-GCCcore-10.1.0.lock successfully removed.
== 2020-05-11 20:07:29,581 filetools.py:1608 INFO Lock removed: /eb/arch-znver2/software/.locks/_eb_arch-znver2_software_M4_1.4.18-GCCcore-10.1.0.lock
== 2020-05-11 20:07:29,581 easyblock.py:3238 WARNING build failed (first 300 chars): Missing modules for dependencies (use --robot?): binutils/2.34
== 2020-05-11 20:07:29,581 easyblock.py:295 INFO Closing log for application name M4 version 1.4.18
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment