Created
November 21, 2014 03:14
-
-
Save rjeschmi/a09a459b999e50343b44 to your computer and use it in GitHub Desktop.
(partial) EasyBuild log for failed build of /tmp/easybuild-smrdID/tweaked_easyconfigs/FragGeneScan-1.19-foss-2014b.eb (PR #1198)
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| == 2014-11-21 03:14:11,560 main.MakeCp INFO This is EasyBuild 1.16.0dev (framework: 1.16.0dev, easyblocks: 1.16.0dev) on host crick. | |
| == 2014-11-21 03:14:11,561 main.MakeCp INFO This is easyblock MakeCp from module easybuild.easyblocks.generic.makecp (/home/rob/scratch/eb-dev/easybuild-easyblocks/easybuild/easyblocks/generic/makecp.pyc) | |
| == 2014-11-21 03:14:11,561 main.MakeCp INFO Build dir set to /home/rob/.local/easybuild/build/FragGeneScan/1.19/foss-2014b | |
| == 2014-11-21 03:14:11,562 main.MakeCp INFO Install dir set to /home/rob/.local/easybuild/software/FragGeneScan/1.19-foss-2014b | |
| == 2014-11-21 03:14:11,563 main.MakeCp INFO Init completed for application name FragGeneScan version 1.19 | |
| == 2014-11-21 03:14:11,563 main.easyblock.<module> INFO Obtained application instance of for FragGeneScan (easyblock: MakeCp) | |
| == 2014-11-21 03:14:11,564 main.MakeCp INFO building and installing FragGeneScan/1.19-foss-2014b... | |
| == 2014-11-21 03:14:11,565 main.MakeCp INFO fetching files... | |
| == 2014-11-21 03:14:11,565 main.MakeCp INFO Starting fetch step | |
| == 2014-11-21 03:14:11,571 main.MakeCp INFO Running method fetch_step part of step fetch | |
| == 2014-11-21 03:14:11,572 main.MakeCp WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2014-11-21 03:14:11,591 main.MakeCp INFO Found file FragGeneScan1.19.tar.gz at /home/rob/.local/easybuild/sources/f/FragGeneScan/FragGeneScan1.19.tar.gz | |
| == 2014-11-21 03:14:11,592 main.MakeCp INFO Added sources: [{'path': '/home/rob/.local/easybuild/sources/f/FragGeneScan/FragGeneScan1.19.tar.gz', 'cmd': None, 'finalpath': '/home/rob/.local/easybuild/build/FragGeneScan/1.19/foss-2014b', 'name': 'FragGeneScan1.19.tar.gz', 'checksum': None}] | |
| == 2014-11-21 03:14:11,592 main.MakeCp INFO no patches provided | |
| == 2014-11-21 03:14:11,608 main.MakeCp INFO md5 checksum for /home/rob/.local/easybuild/sources/f/FragGeneScan/FragGeneScan1.19.tar.gz: 3781a9b684965bcd9f7724186654e3e7 | |
| == 2014-11-21 03:14:11,626 main.MakeCp INFO Setting parallelism: 64 | |
| == 2014-11-21 03:14:11,628 main.MakeCp INFO Checking dirs that need to be created: ['/home/rob/.local/easybuild/software/FragGeneScan', '/home/rob/.local/easybuild/modules/all/FragGeneScan', '/home/rob/.local/easybuild/modules/bio/FragGeneScan'] | |
| == 2014-11-21 03:14:11,629 main.filetools INFO Creating directory /home/rob/.local/easybuild/software/FragGeneScan (parents: True, set_gid: False, sticky: False) | |
| == 2014-11-21 03:14:11,630 main.filetools INFO Creating directory /home/rob/.local/easybuild/modules/all/FragGeneScan (parents: True, set_gid: False, sticky: False) | |
| == 2014-11-21 03:14:11,648 main.filetools INFO Creating directory /home/rob/.local/easybuild/modules/bio/FragGeneScan (parents: True, set_gid: False, sticky: False) | |
| == 2014-11-21 03:14:11,649 main.MakeCp INFO creating build dir, resetting environment... | |
| == 2014-11-21 03:14:11,649 main.MakeCp INFO Starting ready step | |
| == 2014-11-21 03:14:11,656 main.MakeCp INFO Running method check_readiness_step part of step ready | |
| == 2014-11-21 03:14:11,718 main.MakeCp WARNING Loaded modules detected: ['StdEnv', 'EasyBuild/git'] | |
| == 2014-11-21 03:14:11,867 main.MakeCp INFO Running method make_builddir part of step ready | |
| == 2014-11-21 03:14:11,868 main.filetools INFO Creating directory /home/rob/.local/easybuild/build/FragGeneScan/1.19/foss-2014b (parents: True, set_gid: False, sticky: False) | |
| == 2014-11-21 03:14:11,870 main.MakeCp INFO Running method env_reset_changes part of step ready | |
| == 2014-11-21 03:14:11,870 main.MakeCp INFO Running method handle_iterate_opts part of step ready | |
| == 2014-11-21 03:14:11,871 main.MakeCp INFO unpacking... | |
| == 2014-11-21 03:14:11,871 main.MakeCp INFO Starting source step | |
| == 2014-11-21 03:14:11,873 main.MakeCp INFO Running method checksum_step part of step source | |
| == 2014-11-21 03:14:11,873 main.MakeCp INFO Checksum verification for /home/rob/.local/easybuild/sources/f/FragGeneScan/FragGeneScan1.19.tar.gz using None passed. | |
| == 2014-11-21 03:14:11,874 main.MakeCp INFO Running method extract_step part of step source | |
| == 2014-11-21 03:14:11,874 main.MakeCp INFO Unpacking source FragGeneScan1.19.tar.gz | |
| == 2014-11-21 03:14:11,987 main.run ERROR EasyBuild crashed with an error (at easybuild/tools/run.py:382 in parse_cmd_output): cmd "tar xzf /home/rob/.local/easybuild/sources/f/FragGeneScan/FragGeneScan1.19.tar.gz" exited with exitcode 2 and output: | |
| gzip: stdin: unexpected end of file | |
| tar: Unexpected EOF in archive | |
| tar: Unexpected EOF in archive | |
| tar: Error is not recoverable: exiting now | |
| == 2014-11-21 03:14:11,988 main.easyblock.<module> WARNING build failed (first 300 chars): EasyBuild crashed with an error (at easybuild/tools/run.py:382 in parse_cmd_output): cmd "tar xzf /home/rob/.local/easybuild/sources/f/FragGeneScan/FragGeneScan1.19.tar.gz" exited with exitcode 2 and output: | |
| gzip: stdin: unexpected end of file | |
| tar: Unexpected EOF in archive | |
| tar: Unexpected EOF in a | |
| == 2014-11-21 03:14:11,988 main.MakeCp INFO Closing log for application name FragGeneScan version 1.19 |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment