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rjeschmi/easybuild_test_report_easyconfigs_pr1186_20142613-UTC-20-26-13.md

Created November 13, 2014 20:26
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EasyBuild test report for easyconfigs PR #1186
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easybuild_test_report_easyconfigs_pr1186_20142613-UTC-20-26-13.md

Test report for easybuilders/easybuild-easyconfigs#1186

Test result

Build succeeded for 6 out of 6 (3 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

  • SUCCESS SAMtools-0.1.18-goolf-1.4.10.eb
  • SUCCESS bzip2-1.0.6-goolf-1.4.10.eb
  • SUCCESS libreadline-6.2-goolf-1.4.10.eb
  • SUCCESS Python-2.7.3-goolf-1.4.10.eb
  • SUCCESS Boost-1.51.0-goolf-1.4.10-Python-2.7.3.eb
  • SUCCESS TopHat-2.0.12-goolf-1.4.10.eb

Time info

  • start: Thu, 13 Nov 2014 19:37:23 +0000 (UTC)
  • end: Thu, 13 Nov 2014 20:26:13 +0000 (UTC)

EasyBuild info

  • easybuild-framework version: 1.16.0dev
  • easybuild-easyblocks version: 1.16.0dev
  • command line:
eb --from-pr=1186 --upload-test-report --github-user=rjeschmi --robot
  • full configuration (includes defaults):
--buildpath=/home/rob/.local/easybuild/build
--cleanup-builddir
--config=/scratch/rob/eb-dev/easybuild-framework/easybuild/easybuild_config.py
--disable-allow-modules-tool-mismatch
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-debug
--disable-dry-run
--disable-dry-run-short
--disable-experimental
--disable-force
--disable-hidden
--disable-ignore-osdeps
--disable-info
--disable-job
--disable-list-toolchains
--disable-logtostdout
--disable-pretend
--disable-quiet
--disable-recursive-module-unload
--disable-regtest
--disable-sequential
--disable-set-gid-bit
--disable-show-default-moduleclasses
--disable-skip
--disable-skip-test-cases
--disable-sticky-bit
--from-pr=1186
--github-user=rjeschmi
--ignore-dirs=.git,.svn
--installpath=/home/rob/.local/easybuild
--logfile-format=easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log
--module-naming-scheme=EasyBuildMNS
--moduleclasses=bio,chem,data,devel,ide,lib,mpi,perf,system,tools
--modules-tool=Lmod
--oldstyleconfig
--repository=FileRepository
--repositorypath=/home/rob/.local/easybuild/ebfiles_repo
--robot-paths=['/home/rob/scratch/eb-dev/easybuild-easyconfigs/easybuild/easyconfigs']
--robot=True
--sourcepath=/home/rob/.local/easybuild/sources
--strict=warn
--subdir-modules=modules
--subdir-software=software
--suffix-modules-path=all
--tmp-logdir=/tmp
--upload-test-report

System info

  • core count: 64
  • cpu model: AMD Opteron(tm) Processor 6380
  • cpu speed: 2500.0
  • cpu vendor: AMD
  • gcc version: Using built-in specs.; Target: x86_64-redhat-linux; Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux; Thread model: posix; gcc version 4.4.7 20120313 (Red Hat 4.4.7-11) (GCC) ;
  • glibc version: 2.12
  • hostname: crick
  • kernel name: Linux
  • os name: centos
  • os type: Linux
  • os version: 6.5
  • platform name: x86_64-unknown-linux
  • python version: 2.6.6 (r266:84292, Jan 22 2014, 09:42:36) ; [GCC 4.4.7 20120313 (Red Hat 4.4.7-4)]
  • system gcc path: /usr/bin/gcc
  • system python path: /usr/bin/python

List of loaded modules

  • DevEnv
  • EasyBuild/git

Environment

BASH_ENV = /software/packages/lmod/lmod/init/bash
BASH_FUNC_module() = () {  eval $($LMOD_CMD bash "$@");
 [ $? = 0 ] && eval $(${LMOD_SETTARG_CMD:-:} -s sh)
}
CVS_RSH = ssh
G_BROKEN_FILENAMES = 1
HISTCONTROL = ignoredups
HISTSIZE = 1000
HOME = /home/rob
HOSTNAME = crick
LANG = en_CA.UTF-8
LESSOPEN = |/usr/bin/lesspipe.sh %s
LMOD_CMD = /software/packages/lmod/lmod/libexec/lmod
LMOD_COLORIZE = yes
LMOD_DEFAULT_MODULEPATH = /software/packages/modulefiles/Linux:/software/packages/modulefiles/Core:/software/packages/lmod/lmod/modulefiles/Core
LMOD_DIR = /software/packages/lmod/lmod/libexec
LMOD_FULL_SETTARG_SUPPORT = no
LMOD_PKG = /software/packages/lmod/lmod
LMOD_PREPEND_BLOCK = normal
LMOD_SETTARG_CMD = :
LMOD_arch = x86_64
LMOD_sys = Linux
LOADEDMODULES = DevEnv:EasyBuild/git
LOGNAME = rob
LS_COLORS = rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.tbz=01;31:*.tbz2=01;31:*.bz=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=01;36:*.xspf=01;36:
MAIL = /var/spool/mail/rob
MANPATH = /software/packages/lmod/lmod/share/man::
MODULEPATH = /scratch/rob/EasyBuild/modules/all:/software/packages/modulefiles/Linux:/software/packages/modulefiles/Core:/software/packages/lmod/lmod/modulefiles/Core
MODULEPATH_ROOT = /software/packages/modulefiles
MODULESHOME = /software/packages/lmod/lmod
PATH = /home/rob/scratch/eb-dev/easybuild-framework:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin
PWD = /home/rob/src/samtools
PYTHONPATH = /home/rob/scratch/eb-dev/easybuild-easyconfigs:/home/rob/scratch/eb-dev/easybuild-easyblocks:/home/rob/scratch/eb-dev/easybuild-framework
SHELL = /bin/bash
SHLVL = 3
SSH_AUTH_SOCK = /tmp/ssh-agent-rob-screen
SSH_CLIENT = 192.168.160.11 52881 22
SSH_CONNECTION = 192.168.160.11 54914 192.168.160.17 22
SSH_TTY = /dev/pts/0
TERM = xterm
TMUX = /tmp/tmux-542/default,12224,0
TMUX_PANE = %2
USER = rob
_ = /usr/bin/python
_LMFILES_ = /software/packages/lmod/lmod/modulefiles/Core/DevEnv.lua:/software/packages/lmod/lmod/modulefiles/Core/EasyBuild/git
_ModuleTable001_ = 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
_ModuleTable002_ = 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
_ModuleTable003_ = b2QvbG1vZC9tb2R1bGVmaWxlcy9Db3JlIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9zb2Z0d2FyZS9wYWNrYWdlcy9tb2R1bGVmaWxlcy9MaW51eDovc29mdHdhcmUvcGFja2FnZXMvbW9kdWxlZmlsZXMvQ29yZTovc29mdHdhcmUvcGFja2FnZXMvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLFsidmVyc2lvbiJdPTIsfQ==
_ModuleTable_Sz_ = 3
__Init_Default_Modules = 1
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