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@kokitsuyuzaki
kokitsuyuzaki / PLINK-JP.markdown
Last active October 4, 2023 07:30
GWAS研究で利用されるソフトウェア"PLINK"のチュートリアルを大雑把に要約したもの
@steven2358
steven2358 / ffmpeg.md
Last active June 12, 2024 01:10
FFmpeg cheat sheet
@bannanc
bannanc / OE_toandfrom_RDK.ipynb
Last active September 7, 2023 16:54
This is a jupyter notebook explaining how to convert molecules in OpenEye toolkits to the equivalent molecule in RDKit going both directions between toolkits.
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import sys
import os
import requests
import subprocess
import shutil
from logging import getLogger, StreamHandler, INFO
logger = getLogger(__name__)
logger.addHandler(StreamHandler())
@IanColdwater
IanColdwater / twittermute.txt
Last active May 23, 2024 18:37
Here are some terms to mute on Twitter to clean your timeline up a bit.
Mute these words in your settings here: https://twitter.com/settings/muted_keywords
ActivityTweet
generic_activity_highlights
generic_activity_momentsbreaking
RankedOrganicTweet
suggest_activity
suggest_activity_feed
suggest_activity_highlights
suggest_activity_tweet
@ptosco
ptosco / Tetherheavy.ipynb
Created August 21, 2020 21:47
TetherHeavy
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@biochem-fan
biochem-fan / NOTES.md
Last active March 13, 2024 07:29
AlphaFold2 without Docker

Warning: this is my personal messy ad-hoc note. Not intended for production installation. Instruction by @kalinialab is probably better.

My environment

  • Cent OS 7.0
  • CUDA 11.2
  • Without root accoumt

Directories

@cisert
cisert / highlight_atoms_3d.py
Created February 9, 2022 10:48
Draw 3D molecule with highlighted atoms
import py3Dmol
from rdkit import Chem
def draw_mol_with_highlights(mol, hit_ats, style=None):
"""Draw molecule in 3D with highlighted atoms.
Parameters
----------
mol : RDKit molecule
hit_ats : tuple of tuples
@kyo-takano
kyo-takano / making-the-most-of-local-llms.ipynb
Last active June 10, 2024 19:12
ローカルLLMはこーやって使うの💢
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