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@rljacob
Created April 13, 2016 04:29
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blogin1[78]: ./case.submit
checking the case..
Checking file env_case
Checking file env_mach_pes
Checking file env_build
resolve from env: USER
resolve from env: USER
resolve from env: USER
resolve from env: USER
Not able to retreive value for item 'TESTCASE'
Loading soft modules
check_case OK
setting environment variable NETCDF_INCLUDES=/soft/climate/netcdf/4.3.3.1c-4.2cxx-4.4.2f-serial/intel-15.0.1/include
setting environment variable MATLABPATH=
setting environment variable INTEL_PYTHONHOME=/soft/intel/15.0.1/composer_xe_2015.0.090/debugger/python/intel64/
setting environment variable INTEL_HOME=/soft/intel/15.0.1
setting environment variable PATH=/soft/climate/netcdf/4.3.3.1c-4.2cxx-4.4.2f-serial/intel-15.0.1/bin:/soft/mvapich2/2.2b_psm/intel-15.0/bin:/soft/climate/pnetcdf/1.6.1/intel-15.0.1/mvapich2-2.2a-intel-15.0/bin:/soft/intel/15.0.1/composer_xe_2015.0.090/bin/intel64:/soft/python/2.7.3/bin:/soft/cmake/2.8.12/bin:/soft/spack/opt/spack/linux-x86_64/pgi-16.3-0/openmpi-1.10.2-gibftzb3wyfkxc2lqxvnmtkiv2kr6hib/bin:/soft/cmake/2.8.12/bin:/soft/python/2.7.6/bin:/soft/git/2.5.0/bin:/soft/lcrc/bin:/bin:/usr/bin:/usr/local/bin:/usr/X11R6/bin:/home/jacob/bin:.:/soft/softenv/1.6.2/bin
setting environment variable INCLUDE=/soft/intel/15.0.1/mkl/include:/soft/intel/15.0.1/composer_xe_2015.0.090/mkl/include
setting environment variable C_INCLUDE_PATH=/soft/python/2.7.3/include
setting environment variable MPM_LAUNCHER=/soft/intel/15.0.1/composer_xe_2015.0.090/debugger/mpm/bin/start_mpm.sh
setting environment variable MANPATH=/soft/intel/15.0.1/mkl/man/en_US:/soft/mvapich2/2.2b_psm/intel-15.0/share/man:/soft/climate/pnetcdf/1.6.1/intel-15.0.1/mvapich2-2.2a-intel-15.0/man:/soft/intel/15.0.1/composer_xe_2015.0.090/man/en_US:/soft/intel/15.0.1/composer_xe_2015.0.090/debugger/gdb/intel64/share/man/:/soft/python/2.7.3/man:/soft/cmake/2.8.12/share/man:/soft/spack/opt/spack/linux-x86_64/pgi-16.3-0/openmpi-1.10.2-gibftzb3wyfkxc2lqxvnmtkiv2kr6hib/share/man:/soft/cmake/2.8.12/share/man:/soft/python/2.7.6/man:/soft/git/2.5.0/share/man:/soft/lcrc/man:/usr/man:/usr/share/man:/usr/local/man:/usr/X11R6/man:/home/jacob/man:/soft/softenv/1.6.2/man
setting environment variable IDB_HOME=/soft/intel/15.0.1/composer_xe_2015.0.090/bin/intel64
setting environment variable LIBRARY_PATH=/soft/intel/15.0.1/mkl/lib/intel64:/soft/intel/15.0.1/composer_xe_2015.0.090/compiler/lib/intel64:/soft/intel/15.0.1/composer_xe_2015.0.090/ipp/lib/intel64:/soft/intel/15.0.1/composer_xe_2015.0.090/mkl/lib/intel64:/soft/intel/15.0.1/composer_xe_2015.0.090/tbb/lib/intel64/gcc4.4:/soft/lcrc/lib
setting environment variable SOFTENV_LOAD=/soft/softenv/latest/etc/softenv-load.sh
setting environment variable NETCDF_LIBS=/soft/climate/netcdf/4.3.3.1c-4.2cxx-4.4.2f-serial/intel-15.0.1/lib
setting environment variable _=/usr/bin/printenv
setting environment variable TEXINPUTS=
setting environment variable IPPROOT=/soft/intel/15.0.1/composer_xe_2015.0.090/ipp
setting environment variable SIDL_DLL_PATH=
setting environment variable SHLVL=2
setting environment variable PERL5LIB=
setting environment variable INTEL_LICENSE_FILE=28518@licman1.mcs.anl.gov
setting environment variable LM_LICENSE_FILE=
setting environment variable CPATH=/soft/intel/15.0.1/mkl/include:/soft/intel/15.0.1/composer_xe_2015.0.090/ipp/include:/soft/intel/15.0.1/composer_xe_2015.0.090/mkl/include:/soft/intel/15.0.1/composer_xe_2015.0.090/tbb/include
setting environment variable FPATH=/soft/intel/15.0.1/mkl/include
setting environment variable LD_LIBRARY_PATH=/soft/climate/netcdf/4.3.3.1c-4.2cxx-4.4.2f-serial/intel-15.0.1/lib:/soft/intel/15.0.1/mkl/lib/intel64:/soft/intel/15.0.1/mkl/lib/intel64:/soft/intel/15.0.1/composerxe/mkl/lib/intel64:/soft/mvapich2/2.2b_psm/intel-15.0/lib:/soft/climate/pnetcdf/1.6.1/intel-15.0.1/mvapich2-2.2a-intel-15.0/lib:/soft/intel/15.0.1/composer_xe_2015.0.090/compiler/lib/intel64:/soft/intel/15.0.1/composer_xe_2015.0.090/ipp/lib/intel64:/soft/intel/15.0.1/composer_xe_2015.0.090/mkl/lib/intel64:/soft/intel/15.0.1/composer_xe_2015.0.090/tbb/lib/intel64/gcc4.4:/soft/python/2.7.3/lib:/soft/spack/opt/spack/linux-x86_64/pgi-16.3-0/openmpi-1.10.2-gibftzb3wyfkxc2lqxvnmtkiv2kr6hib/lib:/soft/python/2.7.6/lib:/soft/lcrc/lib:/usr/lib64:/usr/lib
setting environment variable TBBROOT=/soft/intel/15.0.1/composer_xe_2015.0.090/tbb
setting environment variable TCLLIBPATH=
setting environment variable MPI_HOME=/soft/mvapich2/2.2b_psm/intel-15.0
setting environment variable PYTHON_HOME=/soft/python/2.7.3
setting environment variable SOFTENV_ALIASES=/soft/softenv/latest/etc/softenv-aliases.sh
setting environment variable INFOPATH=/soft/intel/15.0.1/composer_xe_2015.0.090/debugger/gdb/intel64/share/info/
setting environment variable LD_RUN_PATH=/soft/intel/15.0.1/mkl/lib/intel64:/soft/intel/15.0.1/lib/intel64:/soft/intel/15.0.1/composer_xe_2015.0.090/mpirt/lib/intel64:/soft/intel/15.0.1/ipp/lib/intel64:/soft/intel/15.0.1/tbb/lib/intel64/gcc4.4:/soft/spack/opt/spack/linux-x86_64/pgi-16.3-0/openmpi-1.10.2-gibftzb3wyfkxc2lqxvnmtkiv2kr6hib/lib
setting environment variable NETCDFROOT=/soft/climate/netcdf/4.3.3.1c-4.2cxx-4.4.2f-serial/intel-15.0.1
setting environment variable MKLROOT=/soft/intel/15.0.1/mkl
setting environment variable PNETCDFROOT=/soft/climate/pnetcdf/1.6.1/intel-15.0.1/mvapich2-2.2a-intel-15.0
setting environment variable PYTHONPATH=/soft/python/2.7.3/site-packages:/soft/python/2.7.6/lib/python2.7/site-packages
setting environment variable NLSPATH=/soft/intel/15.0.1/mkl/lib/intel64/locale/%l_%t/%N:/soft/intel/15.0.1/composer_xe_2015.0.090/compiler/lib/intel64/locale/%l_%t/%N:/soft/intel/15.0.1/composer_xe_2015.0.090/ipp/lib/intel64/locale/%l_%t/%N:/soft/intel/15.0.1/composer_xe_2015.0.090/mkl/lib/intel64/locale/%l_%t/%N:/soft/intel/15.0.1/composer_xe_2015.0.090/debugger/gdb/intel64/share/locale/%l_%t/%N:/soft/intel/13.1.3/lib/intel64/locale/%l_%t/%N:/soft/intel/13.1.3/ipp/lib/intel64/locale/%l_%t/%N:/soft/intel/13.1.3/composerxe/debugger/intel64/locale/%l_%t/%N
Job = run
jobname: case.run
lastjobseqnum 0
scriptname: case.run job run
job= run id=JOB_QUEUE value=
job= run id=JOB_WALLCLOCK_TIME value=
job= run id=PROJECT value=ACME
job= run id=PROJECT_REQUIRED value=TRUE
job= test id=JOB_QUEUE value=
job= test id=JOB_WALLCLOCK_TIME value=
job= test id=PROJECT value=ACME
job= test id=PROJECT_REQUIRED value=TRUE
job= st_archive id=JOB_QUEUE value=
job= st_archive id=JOB_WALLCLOCK_TIME value=
job= st_archive id=PROJECT value=ACME
job= st_archive id=PROJECT_REQUIRED value=TRUE
job= lt_archive id=JOB_QUEUE value=
job= lt_archive id=JOB_WALLCLOCK_TIME value=
job= lt_archive id=PROJECT value=ACME
job= lt_archive id=PROJECT_REQUIRED value=TRUE
: qsub ./case.run
Submitting job script: qsub ./case.run
qsub: option requires an argument -- 'q'
Use of uninitialized value $output in scalar chomp at
/lcrc/group/earthscience/jacob/cimeESMCI/utils/perl5lib/Batch/BatchUtils.pm line 220 (#1)
(W uninitialized) An undefined value was used as if it were already
defined. It was interpreted as a "" or a 0, but maybe it was a mistake.
To suppress this warning assign a defined value to your variables.
To help you figure out what was undefined, perl will try to tell you the
name of the variable (if any) that was undefined. In some cases it cannot
do this, so it also tells you what operation you used the undefined value
in. Note, however, that perl optimizes your program and the operation
displayed in the warning may not necessarily appear literally in your
program. For example, "that $foo" is usually optimized into "that "
. $foo, and the warning will refer to the concatenation (.) operator,
even though there is no . in your program.
Use of uninitialized value $jobstring in scalar chomp at
/lcrc/group/earthscience/jacob/cimeESMCI/utils/perl5lib/Batch/BatchUtils.pm line 121 (#1)
Use of uninitialized value $jobstring in pattern match (m//) at
/lcrc/group/earthscience/jacob/cimeESMCI/utils/perl5lib/Batch/BatchUtils.pm line 146 (#1)
could not ascertain dependent job id... aborting
Uncaught exception from user code:
could not ascertain dependent job id... aborting at /lcrc/group/earthscience/jacob/cimeESMCI/utils/perl5lib/Batch/BatchUtils.pm line 152
at /lcrc/group/earthscience/jacob/cimeESMCI/utils/perl5lib/Batch/BatchUtils.pm line 152
Batch::BatchUtils::getJobID('Batch::BatchUtils=HASH(0x1518108)', undef) called at /lcrc/group/earthscience/jacob/cimeESMCI/utils/perl5lib/Batch/BatchUtils.pm line 221
Batch::BatchUtils::submitSingleJob('Batch::BatchUtils=HASH(0x1518108)', 'case.run', undef, 1) called at /lcrc/group/earthscience/jacob/cimeESMCI/utils/perl5lib/Batch/BatchUtils.pm line 177
Batch::BatchUtils::submitJobs('Batch::BatchUtils=HASH(0x1518108)') called at ./case.submit line 118
main::main() called at ./case.submit line 156
Exit 255
blogin1[79]:
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