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April 13, 2016 04:29
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blogin1[78]: ./case.submit | |
checking the case.. | |
Checking file env_case | |
Checking file env_mach_pes | |
Checking file env_build | |
resolve from env: USER | |
resolve from env: USER | |
resolve from env: USER | |
resolve from env: USER | |
Not able to retreive value for item 'TESTCASE' | |
Loading soft modules | |
check_case OK | |
setting environment variable NETCDF_INCLUDES=/soft/climate/netcdf/4.3.3.1c-4.2cxx-4.4.2f-serial/intel-15.0.1/include | |
setting environment variable MATLABPATH= | |
setting environment variable INTEL_PYTHONHOME=/soft/intel/15.0.1/composer_xe_2015.0.090/debugger/python/intel64/ | |
setting environment variable INTEL_HOME=/soft/intel/15.0.1 | |
setting environment variable PATH=/soft/climate/netcdf/4.3.3.1c-4.2cxx-4.4.2f-serial/intel-15.0.1/bin:/soft/mvapich2/2.2b_psm/intel-15.0/bin:/soft/climate/pnetcdf/1.6.1/intel-15.0.1/mvapich2-2.2a-intel-15.0/bin:/soft/intel/15.0.1/composer_xe_2015.0.090/bin/intel64:/soft/python/2.7.3/bin:/soft/cmake/2.8.12/bin:/soft/spack/opt/spack/linux-x86_64/pgi-16.3-0/openmpi-1.10.2-gibftzb3wyfkxc2lqxvnmtkiv2kr6hib/bin:/soft/cmake/2.8.12/bin:/soft/python/2.7.6/bin:/soft/git/2.5.0/bin:/soft/lcrc/bin:/bin:/usr/bin:/usr/local/bin:/usr/X11R6/bin:/home/jacob/bin:.:/soft/softenv/1.6.2/bin | |
setting environment variable INCLUDE=/soft/intel/15.0.1/mkl/include:/soft/intel/15.0.1/composer_xe_2015.0.090/mkl/include | |
setting environment variable C_INCLUDE_PATH=/soft/python/2.7.3/include | |
setting environment variable MPM_LAUNCHER=/soft/intel/15.0.1/composer_xe_2015.0.090/debugger/mpm/bin/start_mpm.sh | |
setting environment variable MANPATH=/soft/intel/15.0.1/mkl/man/en_US:/soft/mvapich2/2.2b_psm/intel-15.0/share/man:/soft/climate/pnetcdf/1.6.1/intel-15.0.1/mvapich2-2.2a-intel-15.0/man:/soft/intel/15.0.1/composer_xe_2015.0.090/man/en_US:/soft/intel/15.0.1/composer_xe_2015.0.090/debugger/gdb/intel64/share/man/:/soft/python/2.7.3/man:/soft/cmake/2.8.12/share/man:/soft/spack/opt/spack/linux-x86_64/pgi-16.3-0/openmpi-1.10.2-gibftzb3wyfkxc2lqxvnmtkiv2kr6hib/share/man:/soft/cmake/2.8.12/share/man:/soft/python/2.7.6/man:/soft/git/2.5.0/share/man:/soft/lcrc/man:/usr/man:/usr/share/man:/usr/local/man:/usr/X11R6/man:/home/jacob/man:/soft/softenv/1.6.2/man | |
setting environment variable IDB_HOME=/soft/intel/15.0.1/composer_xe_2015.0.090/bin/intel64 | |
setting environment variable LIBRARY_PATH=/soft/intel/15.0.1/mkl/lib/intel64:/soft/intel/15.0.1/composer_xe_2015.0.090/compiler/lib/intel64:/soft/intel/15.0.1/composer_xe_2015.0.090/ipp/lib/intel64:/soft/intel/15.0.1/composer_xe_2015.0.090/mkl/lib/intel64:/soft/intel/15.0.1/composer_xe_2015.0.090/tbb/lib/intel64/gcc4.4:/soft/lcrc/lib | |
setting environment variable SOFTENV_LOAD=/soft/softenv/latest/etc/softenv-load.sh | |
setting environment variable NETCDF_LIBS=/soft/climate/netcdf/4.3.3.1c-4.2cxx-4.4.2f-serial/intel-15.0.1/lib | |
setting environment variable _=/usr/bin/printenv | |
setting environment variable TEXINPUTS= | |
setting environment variable IPPROOT=/soft/intel/15.0.1/composer_xe_2015.0.090/ipp | |
setting environment variable SIDL_DLL_PATH= | |
setting environment variable SHLVL=2 | |
setting environment variable PERL5LIB= | |
setting environment variable INTEL_LICENSE_FILE=28518@licman1.mcs.anl.gov | |
setting environment variable LM_LICENSE_FILE= | |
setting environment variable CPATH=/soft/intel/15.0.1/mkl/include:/soft/intel/15.0.1/composer_xe_2015.0.090/ipp/include:/soft/intel/15.0.1/composer_xe_2015.0.090/mkl/include:/soft/intel/15.0.1/composer_xe_2015.0.090/tbb/include | |
setting environment variable FPATH=/soft/intel/15.0.1/mkl/include | |
setting environment variable LD_LIBRARY_PATH=/soft/climate/netcdf/4.3.3.1c-4.2cxx-4.4.2f-serial/intel-15.0.1/lib:/soft/intel/15.0.1/mkl/lib/intel64:/soft/intel/15.0.1/mkl/lib/intel64:/soft/intel/15.0.1/composerxe/mkl/lib/intel64:/soft/mvapich2/2.2b_psm/intel-15.0/lib:/soft/climate/pnetcdf/1.6.1/intel-15.0.1/mvapich2-2.2a-intel-15.0/lib:/soft/intel/15.0.1/composer_xe_2015.0.090/compiler/lib/intel64:/soft/intel/15.0.1/composer_xe_2015.0.090/ipp/lib/intel64:/soft/intel/15.0.1/composer_xe_2015.0.090/mkl/lib/intel64:/soft/intel/15.0.1/composer_xe_2015.0.090/tbb/lib/intel64/gcc4.4:/soft/python/2.7.3/lib:/soft/spack/opt/spack/linux-x86_64/pgi-16.3-0/openmpi-1.10.2-gibftzb3wyfkxc2lqxvnmtkiv2kr6hib/lib:/soft/python/2.7.6/lib:/soft/lcrc/lib:/usr/lib64:/usr/lib | |
setting environment variable TBBROOT=/soft/intel/15.0.1/composer_xe_2015.0.090/tbb | |
setting environment variable TCLLIBPATH= | |
setting environment variable MPI_HOME=/soft/mvapich2/2.2b_psm/intel-15.0 | |
setting environment variable PYTHON_HOME=/soft/python/2.7.3 | |
setting environment variable SOFTENV_ALIASES=/soft/softenv/latest/etc/softenv-aliases.sh | |
setting environment variable INFOPATH=/soft/intel/15.0.1/composer_xe_2015.0.090/debugger/gdb/intel64/share/info/ | |
setting environment variable LD_RUN_PATH=/soft/intel/15.0.1/mkl/lib/intel64:/soft/intel/15.0.1/lib/intel64:/soft/intel/15.0.1/composer_xe_2015.0.090/mpirt/lib/intel64:/soft/intel/15.0.1/ipp/lib/intel64:/soft/intel/15.0.1/tbb/lib/intel64/gcc4.4:/soft/spack/opt/spack/linux-x86_64/pgi-16.3-0/openmpi-1.10.2-gibftzb3wyfkxc2lqxvnmtkiv2kr6hib/lib | |
setting environment variable NETCDFROOT=/soft/climate/netcdf/4.3.3.1c-4.2cxx-4.4.2f-serial/intel-15.0.1 | |
setting environment variable MKLROOT=/soft/intel/15.0.1/mkl | |
setting environment variable PNETCDFROOT=/soft/climate/pnetcdf/1.6.1/intel-15.0.1/mvapich2-2.2a-intel-15.0 | |
setting environment variable PYTHONPATH=/soft/python/2.7.3/site-packages:/soft/python/2.7.6/lib/python2.7/site-packages | |
setting environment variable NLSPATH=/soft/intel/15.0.1/mkl/lib/intel64/locale/%l_%t/%N:/soft/intel/15.0.1/composer_xe_2015.0.090/compiler/lib/intel64/locale/%l_%t/%N:/soft/intel/15.0.1/composer_xe_2015.0.090/ipp/lib/intel64/locale/%l_%t/%N:/soft/intel/15.0.1/composer_xe_2015.0.090/mkl/lib/intel64/locale/%l_%t/%N:/soft/intel/15.0.1/composer_xe_2015.0.090/debugger/gdb/intel64/share/locale/%l_%t/%N:/soft/intel/13.1.3/lib/intel64/locale/%l_%t/%N:/soft/intel/13.1.3/ipp/lib/intel64/locale/%l_%t/%N:/soft/intel/13.1.3/composerxe/debugger/intel64/locale/%l_%t/%N | |
Job = run | |
jobname: case.run | |
lastjobseqnum 0 | |
scriptname: case.run job run | |
job= run id=JOB_QUEUE value= | |
job= run id=JOB_WALLCLOCK_TIME value= | |
job= run id=PROJECT value=ACME | |
job= run id=PROJECT_REQUIRED value=TRUE | |
job= test id=JOB_QUEUE value= | |
job= test id=JOB_WALLCLOCK_TIME value= | |
job= test id=PROJECT value=ACME | |
job= test id=PROJECT_REQUIRED value=TRUE | |
job= st_archive id=JOB_QUEUE value= | |
job= st_archive id=JOB_WALLCLOCK_TIME value= | |
job= st_archive id=PROJECT value=ACME | |
job= st_archive id=PROJECT_REQUIRED value=TRUE | |
job= lt_archive id=JOB_QUEUE value= | |
job= lt_archive id=JOB_WALLCLOCK_TIME value= | |
job= lt_archive id=PROJECT value=ACME | |
job= lt_archive id=PROJECT_REQUIRED value=TRUE | |
: qsub ./case.run | |
Submitting job script: qsub ./case.run | |
qsub: option requires an argument -- 'q' | |
Use of uninitialized value $output in scalar chomp at | |
/lcrc/group/earthscience/jacob/cimeESMCI/utils/perl5lib/Batch/BatchUtils.pm line 220 (#1) | |
(W uninitialized) An undefined value was used as if it were already | |
defined. It was interpreted as a "" or a 0, but maybe it was a mistake. | |
To suppress this warning assign a defined value to your variables. | |
To help you figure out what was undefined, perl will try to tell you the | |
name of the variable (if any) that was undefined. In some cases it cannot | |
do this, so it also tells you what operation you used the undefined value | |
in. Note, however, that perl optimizes your program and the operation | |
displayed in the warning may not necessarily appear literally in your | |
program. For example, "that $foo" is usually optimized into "that " | |
. $foo, and the warning will refer to the concatenation (.) operator, | |
even though there is no . in your program. | |
Use of uninitialized value $jobstring in scalar chomp at | |
/lcrc/group/earthscience/jacob/cimeESMCI/utils/perl5lib/Batch/BatchUtils.pm line 121 (#1) | |
Use of uninitialized value $jobstring in pattern match (m//) at | |
/lcrc/group/earthscience/jacob/cimeESMCI/utils/perl5lib/Batch/BatchUtils.pm line 146 (#1) | |
could not ascertain dependent job id... aborting | |
Uncaught exception from user code: | |
could not ascertain dependent job id... aborting at /lcrc/group/earthscience/jacob/cimeESMCI/utils/perl5lib/Batch/BatchUtils.pm line 152 | |
at /lcrc/group/earthscience/jacob/cimeESMCI/utils/perl5lib/Batch/BatchUtils.pm line 152 | |
Batch::BatchUtils::getJobID('Batch::BatchUtils=HASH(0x1518108)', undef) called at /lcrc/group/earthscience/jacob/cimeESMCI/utils/perl5lib/Batch/BatchUtils.pm line 221 | |
Batch::BatchUtils::submitSingleJob('Batch::BatchUtils=HASH(0x1518108)', 'case.run', undef, 1) called at /lcrc/group/earthscience/jacob/cimeESMCI/utils/perl5lib/Batch/BatchUtils.pm line 177 | |
Batch::BatchUtils::submitJobs('Batch::BatchUtils=HASH(0x1518108)') called at ./case.submit line 118 | |
main::main() called at ./case.submit line 156 | |
Exit 255 | |
blogin1[79]: |
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