Created
September 18, 2014 21:47
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Так работает. Фокус в том, что в данных flybase вообще нет аннотаций по хромосомам. По крайней мере я не нашёл ни одного такого продукта. В данных Ensembl есть, но "annotations are imported from FlyBase release 5.46 (FB2012_04, dated 6 July 2012)". Надо найти способ аннотировать хромосомами данные flybase.
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| wget ftp://ftp.ensembl.org/pub/release-76/fasta/drosophila_melanogaster/dna/Drosophila_melanogaster.BDGP5.dna.toplevel.fa.gz | |
| wget ftp://ftp.ensembl.org/pub/release-76/gtf/drosophila_melanogaster/Drosophila_melanogaster.BDGP5.76.gtf.gz | |
| gunzip Drosophila_melanogaster.BDGP5.76.gtf.gz Drosophila_melanogaster.BDGP5.dna.toplevel.fa.gz | |
| snapr index Drosophila_melanogaster.BDGP5.dna.toplevel.fa index | |
| snapr transcriptome Drosophila_melanogaster.BDGP5.76.gtf Drosophila_melanogaster.BDGP5.dna.toplevel.fa transcriptome -bSpace |
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