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Global Flag,Major Flag,SMC Flag,Commercial Flag,IT Spend,Employee Count,PC Count,Size,Tech Support,Discount,New Engagement Strategy,New Product Adoption,Planning Summit,Revenue,Direct Treatment Effect: Tech Support,Total Treatment Effect: Tech Support,Direct Treatment Effect: Discount,Total Treatment Effect: Discount,Direct Treatment Effect: New Engagement Strategy,Total Treatment Effect: New Engagement Strategy | |
0,0,1,1,72490,27,25,220417,1,0,0,1,0,39691.32,9408.34,10332.57,11020.85,11020.85,0,0 | |
0,0,1,0,5985,19,12,12510,1,0,1,1,1,14492.54,5250.2,6174.43,625.5,625.5,0,0 | |
0,0,1,0,34399,82,55,123530,0,0,0,0,0,16215.76,7470.6,8394.83,6176.5,6176.5,0,0 | |
0,1,1,1,29705,103,58,79297,0,1,1,1,1,25426.04,6585.9400000000005,7510.17,3964.8500000000004,3964.8500000000004,0,0 | |
0,0,1,1,13498,60,26,25472,1,0,1,1,1,21005.51,5509.44,6433.67,1273.6000000000001,1273.6000000000001,0,0 | |
0,0,1,0,1625,149,108,6435,0,1,1,1,0,8637.43,5128.7,6052.93,321.75,321.75,0,0 | |
0,0,0,0,64679,52,25,188629,1,0,0,1,0,32006.67,8772.58,9696.81,9431.45,9431 |
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<?xml version="1.0" encoding="UTF-8"?> | |
<sbml xmlns="http://www.sbml.org/sbml/level2" level="2" version="1"> | |
<model id="BSMod02" name="Bacillus subtilis motility with GFP"> | |
<listOfUnitDefinitions> | |
<unitDefinition id="substance"> | |
<listOfUnits> | |
<unit kind="item" exponent="1" scale="0" multiplier="1"/> | |
</listOfUnits> | |
</unitDefinition> | |
</listOfUnitDefinitions> |
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# Test that: constraints used to build equivalence class are stored in object | |
bl = arcs(nets$long)[1:3, c(2, 1)] | |
colnames(bl) = c("from", "to") | |
wl = arcs(nets$long)[4:5, ] | |
colnames(wl) = c("from", "to") | |
beta = as.data.frame(arcs(nets$long)[6:7, ]) | |
beta$prob = runif(nrow(beta)) | |
exp = c("A", "G") | |
x = ctsdag(nets$long, exp, beta = beta, whitelist = wl, blacklist = bl) | |
stopifnot(names(x$constraints) == c("exp", "beta")) |
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def summary(self): | |
""" | |
Return parameter-level summary of the fit results. | |
Returns: | |
(pd.DataFrame): A dataframe with parameter-level summaries of the posterior. | |
Note column 'n_eff' corresponds to effective sample size and 'Rhat' | |
is a convergence metric. See Stan docs for details. | |
""" |
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#LSMeams-like model | |
\begin{align*} | |
\epsilon_{aijs} &\overset{\text{iid}}{\sim} N(0, \sigma)\\ | |
Y_{aijs} &= \mu_s + R_{i} + C_{j} + A_{a} + R_{i}C_{j} + R^2_{i} + C^2_{j} + A^2_{a} + C_{j}A_{a} + R_{i}A_{a} + \lambda \left \| \vec{\theta}\ \right \|_2+ \epsilon_{aijs} | |
\end{align} | |
# Trent's model | |
\begin{align*} | |
R_{i} &\overset{\text{iid}}{\sim} N(0, 1), \ C_{j} \overset{\text{iid}}{\sim} N(0, 1)\\ | |
\mu_{p(s)} &\overset{\text{iid}}{\sim} N(\mu, \sigma) \\ |
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test.error = function(object){ | |
error_result = tryCatch({ | |
object | |
FALSE | |
}, error = function(e){ | |
TRUE | |
}) | |
stopifnot(error_result) | |
} | |
expect.error <- function(object, regexp = NULL) { |
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stan_str <- " | |
data { | |
int N; | |
int D; | |
int Y[N]; | |
int M[N]; | |
vector[D] X[N]; | |
} | |
parameters { | |
matrix[1, D] beta; |
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stan_str <- " | |
data { | |
int N; | |
int D; | |
int Y[N]; | |
int M[N]; | |
vector[D] X[N]; | |
} | |
parameters { | |
matrix[1, D] beta; |
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library(faraway) | |
library(bnlearn) | |
data(femsmoke) | |
mdl <- empty.graph(c("dead", "age", "smoker")) | |
modelstring(mdl) <- "[dead|age:smoker][age][smoker]" | |
counts <- xtabs(y ~ dead + age + smoker, femsmoke) | |
cpt_age <- margin.table(counts, 2) %>% prop.table | |
cpt_smoker <- margin.table(counts, 3) %>% prop.table | |
cpt_dead <- counts | |
cpt_dead[, , 1] <- prop.table(counts[, , 1], 2) |
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#ifdef SIZE_DEFINITIONS | |
#define N_METABS 21 | |
#define N_ODE_METABS 0 | |
#define N_INDEP_METABS 8 | |
#define N_COMPARTMENTS 1 | |
#define N_GLOBAL_PARAMS 40 | |
#define N_KIN_PARAMS 0 | |
#define N_REACTIONS 20 | |
#define N_ARRAY_SIZE_P 41 // number of parameters |
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