Created
October 9, 2022 16:15
-
-
Save robertoostenveld/6f5f765268847f684585be9e60ecfb67 to your computer and use it in GitHub Desktop.
This is a native python implementation to stream data from a Unicorn EEG system to LSL. It works on macOS, Linux and Windows.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
#!/usr/bin/env python | |
# Unicorn2lsl streams data from a Unicorn Hybrid Black EEG system to LSL | |
# | |
# Copyright (C) 2022 Robert Oostenveld | |
# | |
# This program is free software: you can redistribute it and/or modify | |
# it under the terms of the GNU General Public License as published by | |
# the Free Software Foundation, either version 3 of the License, or | |
# (at your option) any later version. | |
# | |
# This program is distributed in the hope that it will be useful, | |
# but WITHOUT ANY WARRANTY; without even the implied warranty of | |
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | |
# GNU General Public License for more details. | |
# | |
# You should have received a copy of the GNU General Public License | |
# along with this program. If not, see <http://www.gnu.org/licenses/>. | |
import serial | |
import struct | |
import string | |
import random | |
import numpy as np | |
from pylsl import StreamInfo, StreamOutlet | |
device='/dev/cu.UN-20211209' | |
blocksize=0.2 | |
timeout=5 | |
nchan=16 | |
fsample=250 | |
start_acq = [0x61, 0x7C, 0x87] | |
stop_acq = [0x63, 0x5C, 0xC5] | |
start_response = [0x00, 0x00, 0x00] | |
stop_response = [0x00, 0x00, 0x00] | |
start_sequence = [0xC0, 0x00] | |
stop_sequence = [0x0D, 0x0A] | |
try: | |
s = serial.Serial(device, 115200, timeout=timeout) | |
print("connected to serial port " + device) | |
except: | |
raise RuntimeError("cannot connect to serial port " + device) | |
lsl_name = 'Unicorn' | |
lsl_type = 'EEG' | |
lsl_format = 'float32' | |
lsl_id = ''.join(random.choice(string.digits) for i in range(6)) | |
# create an outlet stream | |
info = StreamInfo(lsl_name, lsl_type, nchan, fsample, lsl_format, lsl_id) | |
outlet = StreamOutlet(info) | |
print('started LSL stream: name=%s, type=%s, id=%s' % (lsl_name, lsl_type, lsl_id)) | |
# start the Unicorn data stream | |
s.write(start_acq) | |
response = s.read(3) | |
if response != b'\x00\x00\x00': | |
raise RuntimeError("cannot start data stream") | |
print('started Unicorn') | |
try: | |
while True: | |
dat = np.zeros(nchan) | |
# read one block of data from the serial port | |
payload = s.read(45) | |
# check the start and end bytes | |
if payload[0:2] != b'\xC0\x00': | |
raise RuntimeError("invalid packet") | |
if payload[43:45] != b'\x0D\x0A': | |
raise RuntimeError("invalid packet") | |
battery = 100*float(payload[2] & 0x0F)/15 | |
eeg = np.zeros(8) | |
for ch in range(0,8): | |
# unpack as a big-endian 32 bit signed integer | |
eegv = struct.unpack('>i', b'\x00' + payload[(3+ch*3):(6+ch*3)])[0] | |
# apply two’s complement to the 32-bit signed integral value if the sign bit is set | |
if (eegv & 0x00800000): | |
eegv = eegv | 0xFF000000 | |
eeg[ch] = float(eegv) * 4500000. / 50331642. | |
accel = np.zeros(3) | |
# unpack as a little-endian 16 bit signed integer | |
accel[0] = float(struct.unpack('<h', payload[27:29])[0]) / 4096. | |
accel[1] = float(struct.unpack('<h', payload[29:31])[0]) / 4096. | |
accel[2] = float(struct.unpack('<h', payload[31:33])[0]) / 4096. | |
gyro = np.zeros(3) | |
# unpack as a little-endian 16 bit signed integer | |
gyro[0] = float(struct.unpack('<h', payload[27:29])[0]) / 32.8 | |
gyro[1] = float(struct.unpack('<h', payload[29:31])[0]) / 32.8 | |
gyro[2] = float(struct.unpack('<h', payload[31:33])[0]) / 32.8 | |
counter = struct.unpack('<L', payload[39:43])[0] | |
# collect the data that will be sent to LSL | |
dat[0:8] = eeg | |
dat[8:11] = accel | |
dat[11:14] = gyro | |
dat[14] = battery | |
dat[15] = counter | |
# send the data to LSL | |
outlet.push_sample(dat) | |
if ((counter % fsample) == 0): | |
print('received %d samples, battery %d %%' % (counter, battery)) | |
except: | |
print('closing') | |
s.write(stop_acq) | |
s.close() | |
del outlet | |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
I found 2 bugs in this example:
eeg_channel | 0xff000000
as Python considers these as unsigned ints. It will actually add about 380 V instead. Could be resolved in two ways:struct.unpack('>i', struct.pack('>I', eeg_channel | 0xff000000))[0]
eeg_channel - 0x01000000
Otherwise great example, thanks!